|
A newer version of this gene model can be found here:
Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
---|---|---|---|---|---|
AT1G68990 | AT | Annotation by Michelle Graham. TAIR10: male gametophyte defective 3 | chr1:25935499-25940755 REVERSE LENGTH=976 | SoyBase | E_val: 0 | ISS |
GO:0006351 | GO-bp | Annotation by Michelle Graham. GO Biological Process: transcription, DNA-dependent | SoyBase | N/A | ISS |
GO:0009793 | GO-bp | Annotation by Michelle Graham. GO Biological Process: embryo development ending in seed dormancy | SoyBase | N/A | ISS |
GO:0009860 | GO-bp | Annotation by Michelle Graham. GO Biological Process: pollen tube growth | SoyBase | N/A | ISS |
GO:0048481 | GO-bp | Annotation by Michelle Graham. GO Biological Process: ovule development | SoyBase | N/A | ISS |
GO:0003677 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: DNA binding | SoyBase | N/A | ISS |
GO:0003899 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: DNA-directed RNA polymerase activity | SoyBase | N/A | ISS |
PTHR10102 | Panther | T3/T7 BACTERIOPHAGE-RELATED MITOCHODRIAL DNA-DIRECTED RNA POLYMERASE | JGI | ISS | |
PF00940 | PFAM | DNA-dependent RNA polymerase | JGI | ISS | |
UniRef100_F6HGF2 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: DNA-directed RNA polymerase n=1 Tax=Vitis vinifera RepID=F6HGF2_VITVI | SoyBase | E_val: 0 | ISS |
UniRef100_UPI000233E798 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233E798 related cluster n=1 Tax=unknown RepID=UPI000233E798 | SoyBase | E_val: 0 | ISS |
Glyma16g13080 not represented in the dataset |
Glyma16g13080 not represented in the dataset |
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Corresponding Name | Annotation Version | Evidence | Comments |
---|---|---|---|
Glyma.16g091400 | Wm82.a2.v1 | IGC | As supplied by JGI |
Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma16g13080.2 sequence type=CDS gene model=Glyma16g13080 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTGGACGAACTTGGCCAAGCGAGCTTCCTCAACCCTAAGGAATAACTTCCGTGTTTCTTCTTTATCTCCGAGATTTTGTAAGCCCCAAACATGTAAAACATTTCAGGGTTTCCCTGAAGTCGGGGTGAGTCAGTCCAAGTTTGTGTTTCACGAGGGTTTTTCTTGTTCTTCTTCTTGGTCGTGGTCTTGGATGGTGCTGGGCAGAGGTCATGCTAGCGTTGCGGAGGCTATTGAGTCGACGGACACCGAAGATGACTACGATGAGGTTCAGAAATTGTTGGAGGAAATGGCGAAGGCAGAACACAAAGTGGACAGCAGCAGCTACAAGTACAAGTTGCTGAAGAGGAGGCAGATAGAATCGGAGACGGAGGCGTGGGCAGAAGCAGCAAGAGAGTACGGGGAACTGTTGGAGGACATGCGTGACAAGAAGCTTGCTCCCAATTTGCCGTACATGAAGTCACTCTTTCTGGGTTGGTTTGAGCCCCTAAGAAATGCAATTCTCGCTGATCAAGACCTTTGCAAGGATAGCAAGTGCAGGATGAGCCATGCTCCTTATTTCAATGACTTGCCCGCTGACATGATGGCTGTGGTCACCATGCACAAGTTGATGGCCTTGTTGATGACCAATGCTAATGGGGTTGGCACCGCTCGGGTCATTCAAGCCGCTTGTCAAATAGGTGAAGCTGTTGAGAACGAGGCTAGGATATACCAATTTATGAAGAGGGAGAAGGAGAACAAATCATCTCATCTTGCACCGGTAGAACAAAGTGGAAAACTGACCGAAGAGAACGGGGAAATGGAACAAAAGCAGAGCAGACTTCGGAAAAGAGTTGCTGGTTTGATGAAAAAACAGAAGAAGCTACAAGCGATGGGAATAATCGGGAGACAAGATGATTGGAAAACTTGGGGACAAGAAGCTCAAGTAAAGGTTGGTTCTCGATTGATGCAACTGTTAATAGAAACAGCCTACATTCAACCGCCTACCAATCAGATTGGAGATGGTCCACCAGATATCCACCCTGCATTTAGACATACCCTTAGAACACTTTCAAATGAGTCACAGAGGGAAACTAGGAGATATGGTGTTATTGAATGTGATCCTCTGGTGCAAAATGGCCTTGAAAAGTCTGCAAGGCACATGGTCATCCCCTATATGCCAATGTTGGTGCCACCTATAAACTGGACAGGGTATGACAAAGGAGCATACTTGTTTTTGCCATCGTATGTTATGAGAGTACATGGAGCAAAGCAGCAACGTGAAGCAGTTAAGAGGGCTCCCAAGAGTCAACTTGATCCTGTTTTTGAGGCCCTTAATACCCTTGGCAATACCAAATGGAGGGTAAACAAAAGGGTGCTCTGTGTGATAGATCAAATATGGGCTAATGGAGGACGCCTGGCTGATTTGGTGGATCGTGAAAATGTTCCTAGCCCTAAGGAACCAGATACAATAGATGAAGCAGAAATCCGAAAATGGAAGTGGAAAGTCAAAGCTGTGAAAAAGGAGAATAGCGAGAGACATTCACAGCGATGTGACATAGAACTTAAACTTGCTGTTGCTCGAAAGATGAAGGATGAAGAAGCCTTCTATTATCCTCACAATCTTGATTTTCGAGGGCGAGCTTATCCCATGCACCCATATTTGAATCATCTTGGTTCTGATTTATGCCGAGGCATACTTGAGTTTGCAGAGGGACGTTCACTAGGGAAGTCAGGCTTGCGCTGGTTAAAAATACATCTTGCAAATTTGTATGCTGGTGGTGTCGACAAGTTATCTTATGATGGCCGAATATCATTTACTGAGAACCACCTGGATGATATATTTGATTCTGCAGACAGGCCTCTTGAAGGAAAACACTGGTGGTTGCAAGCAGAGGATCCTTTTCAGTGCTTGGCGGCATGCATCAATCTTTCGGAAGCATTGAGAAGCCCAACTCCTGAGACTACCATTTCTCATATGCCAGTACACCAGGATGGTTCATGCAATGGCTTGCAACACTATGCAGCACTTGGGAGGGACAAGTTGGGAGCTGCTGCAGTCAATCTTGTTGGTGGAGACCAGCCTGCTGATGTTTACTCAGGAATTGCTGCCAGAGTACTTGAAATCATGAAAAGGGACGCAGAGAAAGATCCCCGTACTAATCCGAATGCATTGCATGCTAGGCGTTTAATCAGCCAGGTGGACCGAAAGTTGGTGAAGCAAACAGTGATGACATCAGTCTATGGAGTGACTTACATTGGGGCCAGGGACCAGATAAAGAGGAGGCTAAAGGAGCGTTGTGCCATTGAGGATGATGTAGAGCTGTTTGCTGCTTCCTGCTATGCAGCAAAAACCACTCTCACCGCTTTAGAAGAGATGTTTGAGGCTGCAAGGAGTATTATGGGTTGGCTAGGTGATTGTGCAAAGGTATGCCTAATTTTGTGGGATTATCATTGCTAA
>Glyma16g13080.2 sequence type=predicted peptide gene model=Glyma16g13080 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MWTNLAKRASSTLRNNFRVSSLSPRFCKPQTCKTFQGFPEVGVSQSKFVFHEGFSCSSSWSWSWMVLGRGHASVAEAIESTDTEDDYDEVQKLLEEMAKAEHKVDSSSYKYKLLKRRQIESETEAWAEAAREYGELLEDMRDKKLAPNLPYMKSLFLGWFEPLRNAILADQDLCKDSKCRMSHAPYFNDLPADMMAVVTMHKLMALLMTNANGVGTARVIQAACQIGEAVENEARIYQFMKREKENKSSHLAPVEQSGKLTEENGEMEQKQSRLRKRVAGLMKKQKKLQAMGIIGRQDDWKTWGQEAQVKVGSRLMQLLIETAYIQPPTNQIGDGPPDIHPAFRHTLRTLSNESQRETRRYGVIECDPLVQNGLEKSARHMVIPYMPMLVPPINWTGYDKGAYLFLPSYVMRVHGAKQQREAVKRAPKSQLDPVFEALNTLGNTKWRVNKRVLCVIDQIWANGGRLADLVDRENVPSPKEPDTIDEAEIRKWKWKVKAVKKENSERHSQRCDIELKLAVARKMKDEEAFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRSLGKSGLRWLKIHLANLYAGGVDKLSYDGRISFTENHLDDIFDSADRPLEGKHWWLQAEDPFQCLAACINLSEALRSPTPETTISHMPVHQDGSCNGLQHYAALGRDKLGAAAVNLVGGDQPADVYSGIAARVLEIMKRDAEKDPRTNPNALHARRLISQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERCAIEDDVELFAASCYAAKTTLTALEEMFEAARSIMGWLGDCAKVCLILWDYHC*
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