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Integrating Genetics and Genomics to Advance Soybean Research




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Report for Sequence Feature Glyma16g13080

Feature Type:gene_model
Chromosome:Gm16
Start:14070251
stop:14092533
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G68990AT Annotation by Michelle Graham. TAIR10: male gametophyte defective 3 | chr1:25935499-25940755 REVERSE LENGTH=976 SoyBaseE_val: 0ISS
GO:0006351GO-bp Annotation by Michelle Graham. GO Biological Process: transcription, DNA-dependent SoyBaseN/AISS
GO:0009793GO-bp Annotation by Michelle Graham. GO Biological Process: embryo development ending in seed dormancy SoyBaseN/AISS
GO:0009860GO-bp Annotation by Michelle Graham. GO Biological Process: pollen tube growth SoyBaseN/AISS
GO:0048481GO-bp Annotation by Michelle Graham. GO Biological Process: ovule development SoyBaseN/AISS
GO:0003677GO-mf Annotation by Michelle Graham. GO Molecular Function: DNA binding SoyBaseN/AISS
GO:0003899GO-mf Annotation by Michelle Graham. GO Molecular Function: DNA-directed RNA polymerase activity SoyBaseN/AISS
PTHR10102Panther T3/T7 BACTERIOPHAGE-RELATED MITOCHODRIAL DNA-DIRECTED RNA POLYMERASE JGI ISS
PF00940PFAM DNA-dependent RNA polymerase JGI ISS
UniRef100_F6HGF2UniRef Annotation by Michelle Graham. Most informative UniRef hit: DNA-directed RNA polymerase n=1 Tax=Vitis vinifera RepID=F6HGF2_VITVI SoyBaseE_val: 0ISS
UniRef100_UPI000233E798UniRef Annotation by Michelle Graham. Best UniRef hit: UPI000233E798 related cluster n=1 Tax=unknown RepID=UPI000233E798 SoyBaseE_val: 0ISS

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma16g13080 not represented in the dataset

Glyma16g13080 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Corresponding NameAnnotation VersionEvidenceComments
Glyma.16g091400 Wm82.a2.v1IGC As supplied by JGI

Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

>Glyma16g13080.2   sequence type=CDS   gene model=Glyma16g13080   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTGGACGAACTTGGCCAAGCGAGCTTCCTCAACCCTAAGGAATAACTTCCGTGTTTCTTCTTTATCTCCGAGATTTTGTAAGCCCCAAACATGTAAAACATTTCAGGGTTTCCCTGAAGTCGGGGTGAGTCAGTCCAAGTTTGTGTTTCACGAGGGTTTTTCTTGTTCTTCTTCTTGGTCGTGGTCTTGGATGGTGCTGGGCAGAGGTCATGCTAGCGTTGCGGAGGCTATTGAGTCGACGGACACCGAAGATGACTACGATGAGGTTCAGAAATTGTTGGAGGAAATGGCGAAGGCAGAACACAAAGTGGACAGCAGCAGCTACAAGTACAAGTTGCTGAAGAGGAGGCAGATAGAATCGGAGACGGAGGCGTGGGCAGAAGCAGCAAGAGAGTACGGGGAACTGTTGGAGGACATGCGTGACAAGAAGCTTGCTCCCAATTTGCCGTACATGAAGTCACTCTTTCTGGGTTGGTTTGAGCCCCTAAGAAATGCAATTCTCGCTGATCAAGACCTTTGCAAGGATAGCAAGTGCAGGATGAGCCATGCTCCTTATTTCAATGACTTGCCCGCTGACATGATGGCTGTGGTCACCATGCACAAGTTGATGGCCTTGTTGATGACCAATGCTAATGGGGTTGGCACCGCTCGGGTCATTCAAGCCGCTTGTCAAATAGGTGAAGCTGTTGAGAACGAGGCTAGGATATACCAATTTATGAAGAGGGAGAAGGAGAACAAATCATCTCATCTTGCACCGGTAGAACAAAGTGGAAAACTGACCGAAGAGAACGGGGAAATGGAACAAAAGCAGAGCAGACTTCGGAAAAGAGTTGCTGGTTTGATGAAAAAACAGAAGAAGCTACAAGCGATGGGAATAATCGGGAGACAAGATGATTGGAAAACTTGGGGACAAGAAGCTCAAGTAAAGGTTGGTTCTCGATTGATGCAACTGTTAATAGAAACAGCCTACATTCAACCGCCTACCAATCAGATTGGAGATGGTCCACCAGATATCCACCCTGCATTTAGACATACCCTTAGAACACTTTCAAATGAGTCACAGAGGGAAACTAGGAGATATGGTGTTATTGAATGTGATCCTCTGGTGCAAAATGGCCTTGAAAAGTCTGCAAGGCACATGGTCATCCCCTATATGCCAATGTTGGTGCCACCTATAAACTGGACAGGGTATGACAAAGGAGCATACTTGTTTTTGCCATCGTATGTTATGAGAGTACATGGAGCAAAGCAGCAACGTGAAGCAGTTAAGAGGGCTCCCAAGAGTCAACTTGATCCTGTTTTTGAGGCCCTTAATACCCTTGGCAATACCAAATGGAGGGTAAACAAAAGGGTGCTCTGTGTGATAGATCAAATATGGGCTAATGGAGGACGCCTGGCTGATTTGGTGGATCGTGAAAATGTTCCTAGCCCTAAGGAACCAGATACAATAGATGAAGCAGAAATCCGAAAATGGAAGTGGAAAGTCAAAGCTGTGAAAAAGGAGAATAGCGAGAGACATTCACAGCGATGTGACATAGAACTTAAACTTGCTGTTGCTCGAAAGATGAAGGATGAAGAAGCCTTCTATTATCCTCACAATCTTGATTTTCGAGGGCGAGCTTATCCCATGCACCCATATTTGAATCATCTTGGTTCTGATTTATGCCGAGGCATACTTGAGTTTGCAGAGGGACGTTCACTAGGGAAGTCAGGCTTGCGCTGGTTAAAAATACATCTTGCAAATTTGTATGCTGGTGGTGTCGACAAGTTATCTTATGATGGCCGAATATCATTTACTGAGAACCACCTGGATGATATATTTGATTCTGCAGACAGGCCTCTTGAAGGAAAACACTGGTGGTTGCAAGCAGAGGATCCTTTTCAGTGCTTGGCGGCATGCATCAATCTTTCGGAAGCATTGAGAAGCCCAACTCCTGAGACTACCATTTCTCATATGCCAGTACACCAGGATGGTTCATGCAATGGCTTGCAACACTATGCAGCACTTGGGAGGGACAAGTTGGGAGCTGCTGCAGTCAATCTTGTTGGTGGAGACCAGCCTGCTGATGTTTACTCAGGAATTGCTGCCAGAGTACTTGAAATCATGAAAAGGGACGCAGAGAAAGATCCCCGTACTAATCCGAATGCATTGCATGCTAGGCGTTTAATCAGCCAGGTGGACCGAAAGTTGGTGAAGCAAACAGTGATGACATCAGTCTATGGAGTGACTTACATTGGGGCCAGGGACCAGATAAAGAGGAGGCTAAAGGAGCGTTGTGCCATTGAGGATGATGTAGAGCTGTTTGCTGCTTCCTGCTATGCAGCAAAAACCACTCTCACCGCTTTAGAAGAGATGTTTGAGGCTGCAAGGAGTATTATGGGTTGGCTAGGTGATTGTGCAAAGGTATGCCTAATTTTGTGGGATTATCATTGCTAA

>Glyma16g13080.2   sequence type=predicted peptide   gene model=Glyma16g13080   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MWTNLAKRASSTLRNNFRVSSLSPRFCKPQTCKTFQGFPEVGVSQSKFVFHEGFSCSSSWSWSWMVLGRGHASVAEAIESTDTEDDYDEVQKLLEEMAKAEHKVDSSSYKYKLLKRRQIESETEAWAEAAREYGELLEDMRDKKLAPNLPYMKSLFLGWFEPLRNAILADQDLCKDSKCRMSHAPYFNDLPADMMAVVTMHKLMALLMTNANGVGTARVIQAACQIGEAVENEARIYQFMKREKENKSSHLAPVEQSGKLTEENGEMEQKQSRLRKRVAGLMKKQKKLQAMGIIGRQDDWKTWGQEAQVKVGSRLMQLLIETAYIQPPTNQIGDGPPDIHPAFRHTLRTLSNESQRETRRYGVIECDPLVQNGLEKSARHMVIPYMPMLVPPINWTGYDKGAYLFLPSYVMRVHGAKQQREAVKRAPKSQLDPVFEALNTLGNTKWRVNKRVLCVIDQIWANGGRLADLVDRENVPSPKEPDTIDEAEIRKWKWKVKAVKKENSERHSQRCDIELKLAVARKMKDEEAFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRSLGKSGLRWLKIHLANLYAGGVDKLSYDGRISFTENHLDDIFDSADRPLEGKHWWLQAEDPFQCLAACINLSEALRSPTPETTISHMPVHQDGSCNGLQHYAALGRDKLGAAAVNLVGGDQPADVYSGIAARVLEIMKRDAEKDPRTNPNALHARRLISQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERCAIEDDVELFAASCYAAKTTLTALEEMFEAARSIMGWLGDCAKVCLILWDYHC*







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