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Report for Sequence Feature Glyma16g12160

Feature Type:gene_model
Chromosome:Gm16
Start:12973133
stop:12978375
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma16g12160
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G25070AT Annotation by Michelle Graham. TAIR10: RPM1 interacting protein 4 | chr3:9132458-9133747 FORWARD LENGTH=211 SoyBaseE_val: 4.00E-45ISS
GO:0002237GO-bp Annotation by Michelle Graham. GO Biological Process: response to molecule of bacterial origin SoyBaseN/AISS
GO:0006468GO-bp Annotation by Michelle Graham. GO Biological Process: protein phosphorylation SoyBaseN/AISS
GO:0009617GO-bp Annotation by Michelle Graham. GO Biological Process: response to bacterium SoyBaseN/AISS
GO:0009626GO-bp Annotation by Michelle Graham. GO Biological Process: plant-type hypersensitive response SoyBaseN/AISS
GO:0009816GO-bp Annotation by Michelle Graham. GO Biological Process: defense response to bacterium, incompatible interaction SoyBaseN/AISS
GO:0010204GO-bp Annotation by Michelle Graham. GO Biological Process: defense response signaling pathway, resistance gene-independent SoyBaseN/AISS
GO:0034051GO-bp Annotation by Michelle Graham. GO Biological Process: negative regulation of plant-type hypersensitive response SoyBaseN/AISS
GO:0045087GO-bp Annotation by Michelle Graham. GO Biological Process: innate immune response SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0005886GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane SoyBaseN/AISS
GO:0016020GO-cc Annotation by Michelle Graham. GO Cellular Compartment: membrane SoyBaseN/AISS
GO:0005515GO-mf Annotation by Michelle Graham. GO Molecular Function: protein binding SoyBaseN/AISS
PF05627PFAM Cleavage site for pathogenic type III effector avirulence factor Avr JGI ISS
UniRef100_C6TH04UniRef Annotation by Michelle Graham. Most informative UniRef hit: RINb protein n=1 Tax=Glycine max RepID=C6TH04_SOYBN SoyBaseE_val: 2.00E-179ISS
UniRef100_C6TH04UniRef Annotation by Michelle Graham. Best UniRef hit: RINb protein n=1 Tax=Glycine max RepID=C6TH04_SOYBN SoyBaseE_val: 2.00E-179ISS

Expression Patterns of Glyma16g12160
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma16g12160 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.16g090700 Wm82.a2.v1IGC As supplied by JGI

References for Glyma16g12160
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma16g12160
>Glyma16g12160.1   sequence type=CDS   gene model=Glyma16g12160   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCACAACGTTCTCATGTACCCAAATTTGGCAATTGGGATAGTGGAGAGAATGTTCCTTATACAGCATATTTTGACAAGGCACGGAAAGGTCGAACTGGCACAAGGATAATAAATCCAAATGACCCCGAGGAAAATGCTGATTTAAGTTTTGATAATCCATCATCTGATAACCTACCTCCTACCAGACCTAGAACTAATTCAGAGGATCAATCCGGAAAAGGATCACTGCATTTGGAAGATGATCCCAAGAATTTTATCGAATCTCCAGCTCGTCATGACAATGTAAGCAGTAGGAGTGGCAGTAGAAGCCATGGAGTAGGTTCTGCTGATAACCGTAGAAGACATTCAACGCAAAGTACTGGGTCTGAGTACAGCATTGAACGTTCACCGCTTCATCGCCAGGCTAGAGCCCCAGGCAGAGACAGTCCCCAGTGGGAACCAAAGAATTCATATGACAGCAGTCAGGGAACACCAGGAAGGTCTCGGTTAAGACCGGCTAATCGAGGAGATGAAACACCAGATAAAGGTGCAGCTGTTCCAAAGTTTGGTGACTGGGATGTGAATAACCCTGCATCAGCAGATGGCTTTACTCACATTTTCAACAAAGTGAGGGAGGAGAGACAAGGCGGGCCAGGACAAGTGCCAGGAACGCCTAATGAGAGACCACAACCTATTAATGGCCTATCTAATGATGACAAAGTCCAGTGTTGCTGCTTTGCGTGGGGTGGGAAAAAATGA
Predicted protein sequences of Glyma16g12160
>Glyma16g12160.1   sequence type=predicted peptide   gene model=Glyma16g12160   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAQRSHVPKFGNWDSGENVPYTAYFDKARKGRTGTRIINPNDPEENADLSFDNPSSDNLPPTRPRTNSEDQSGKGSLHLEDDPKNFIESPARHDNVSSRSGSRSHGVGSADNRRRHSTQSTGSEYSIERSPLHRQARAPGRDSPQWEPKNSYDSSQGTPGRSRLRPANRGDETPDKGAAVPKFGDWDVNNPASADGFTHIFNKVREERQGGPGQVPGTPNERPQPINGLSNDDKVQCCCFAWGGKK*






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