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Report for Sequence Feature Glyma16g09225

Feature Type:gene_model
Chromosome:Gm16
Start:9028881
stop:9053979
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma16g09225
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G21630AT Annotation by Michelle Graham. TAIR10: Sec23/Sec24 protein transport family protein | chr2:9250346-9253829 FORWARD LENGTH=761 SoyBaseE_val: 0ISS
GO:0006810GO-bp Annotation by Michelle Graham. GO Biological Process: transport SoyBaseN/AISS
GO:0006886GO-bp Annotation by Michelle Graham. GO Biological Process: intracellular protein transport SoyBaseN/AISS
GO:0006888GO-bp Annotation by Michelle Graham. GO Biological Process: ER to Golgi vesicle-mediated transport SoyBaseN/AISS
GO:0005737GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm SoyBaseN/AISS
GO:0030127GO-cc Annotation by Michelle Graham. GO Cellular Compartment: COPII vesicle coat SoyBaseN/AISS
GO:0005215GO-mf Annotation by Michelle Graham. GO Molecular Function: transporter activity SoyBaseN/AISS
GO:0008270GO-mf Annotation by Michelle Graham. GO Molecular Function: zinc ion binding SoyBaseN/AISS
KOG1986 KOG Vesicle coat complex COPII, subunit SEC23 JGI ISS
PTHR11141Panther PROTEIN TRANSPORT PROTEIN SEC23 JGI ISS
PF00626PFAM Gelsolin repeat JGI ISS
PF04810PFAM Sec23/Sec24 zinc finger JGI ISS
PF04811PFAM Sec23/Sec24 trunk domain JGI ISS
PF04815PFAM Sec23/Sec24 helical domain JGI ISS
PF08033PFAM Sec23/Sec24 beta-sandwich domain JGI ISS
UniRef100_G7LEA6UniRef Annotation by Michelle Graham. Most informative UniRef hit: Protein transport protein SEC23 n=1 Tax=Medicago truncatula RepID=G7LEA6_MEDTR SoyBaseE_val: 0ISS
UniRef100_I1JMB0UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JMB0_SOYBN SoyBaseE_val: 0ISS

Expression Patterns of Glyma16g09225
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma16g09225 not represented in the dataset
Glyma16g09225 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma16g09225
ParalogEvidenceComments
Glyma03g22740 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma16g09225 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.16g082400 Wm82.a2.v1IGC As supplied by JGI

References for Glyma16g09225
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma16g09225
>Glyma16g09225.1   sequence type=CDS   gene model=Glyma16g09225   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCCGAATTTCTGGATCTCGAATCCCAAGACGGCGTGCGAATGCCGTGGAACGTGATCCCTGGCACGAAGCAGGACGCCCAAAACGCCGTCGTCCCCGTCTCCGCCGTCTACACTCCCATAAAGCACTTCACCTCGATGCCGCTCCTCAACTACTCCCCTCTCCGGTGCCGCACTTGCCGCTCCGTCCTCAACCCCTTCTGCATCGTCGACTTCGCCGCCAAGATCTGGATCTGCCCCTTCTGCTTCCAGCGCAACCACTTCCCCCCTCACTACGCATCCATCTCCGACGACTCCCTCCCCGCCGAGCTCTTCCCTCAGTACACCACCGTCGAATACAACTCCGACGCCGTGGGCCCCACCAATACCCCCTCCGTGCCCCCAGTCTTCCTCTTCGTCGTCGACACGTGCGTCATCGAAGAGGAGATCGGGTTCCTGCGCTCGGCGTTAGCCCAGGCCGTGGAGCTTTTGCCTGAGAACTCGCTCGTTGGACTCATTACCTTCGGGATGTTTGCTCATGTTCACGAATTAGGGTTCGGTGCGGTGCCGAAGACTTACGTTTTCAAGGGATCTAAGGATGTTACCAAGGACCAGTTGCTCGAGCAGATGAGTTTTTTTGCGAAGAAGCCGCGCCCGGCGGTCGGCGTGGTCGCTGGCGCGAGGGACGGGCTCTCTACGGAGAGTATTTCGCGGTTCCTCGTGCCGGCGTCGGAGTGCGAGTTCACTCTCAATTCGGTATTGGAGGAGCTGCAGAAGGATCCTTGGGCGGTGCCGGCGGATCAGCGGGCTGCTCGGTGCACCAGCACGGCACTGAGTATTGCGGCGAGTTTGTTGGGGGCATGTGTCCCTGGCTCTGCTGCAAGAATAATGGCATTTATTGGAGGACCAGCTACTGAAGGACCTGCTCCTATTGTATCCAAACAACTTTCTGAACCAATTCGCTCTCACAAGGATCTGGATAAAGATTCTGTGCCACATTACCATAACTGTGTGAAATTCTATGATGGACTTTCGAAGCAGCTTGTTCATCAAGGCCATGTACTAGATCTTTTTGCTTGTGCTCTTGATCAGGTTGGAATTGCTGAACTTAAAACAGCTGTTGAAAGAACCGGAGGTCTTGTTGTACTTGCTGAAAGTTTTGGCCATTCAGTGTTCAAGGATTCACTAAAGCGTGTTTTCCAATCGGGTGATTATGATTTGGGTCTATCTTCAAATGGAATATTTGAGATAAACTGCTCTAAGGACTTGAAAGTCCAAGGTATTATTGGCCCTTGTGCATCTCTTGAAAAGAAAGGCCCATTATGCTCAGATGTTGTTATTGGTCAAGGGGGTACAAGTGCATGGAAGATGTGTGGCCTTGACAAATCCACATCATTGTGTCTATTTTTCGACGTTGTGAGGAAGGAAACTCCTGATGCAACAATGCAGTCCACAAGCAATCAATTTTACTTCCAATTTTTGACGTATTATCAGAATAACAGTGGGCAAATGAGATTACGGGTTACGACCCTTTCACGTAGATGGGTTGCTGGACCAGAAAGTATACAGGACTTGATTGCTGGATTTGACCAAGAAGCAGCTGCTATAGTCATGGCACGCCAAGTCTCTTTTAAAATGGAAACAGAGGCTGAATTCGATCCTATCAGATGGTTGGACAAGGCATTGATAAATTTGTGTTCTCGGTTTGGGGAATTTCAAAAAGACACTCCATCTTCTTTCAGTTTGTCTCCCAGGTTGTCAATATTCCCTCAATTTATGTTTCATTTACGACGCTCTCAATTTGTTCAGGTCTTTAACAACAGCCCAGATGAGACTGCTTACTTTAGAATGATACTGAACCGTGAAAATGTTACAAATTCTGTTGTCATGGTTCAGCCTTCGTTGATTTGTTATTCATTCCATGCTGGTCCTGAACCAGCTCTTCTTGATGTTGCGGCCATTGCGGCAGATAAGATCCTGCTTTTGGATTCATTTTTCACTGTTGTCATTTTTCATGGTTCAACCATTGCTCAGTGGCGTAAGGCTGGATATCATAATGAACCGGAACATCAGGCATTTGCTCAATTGCTACTAGCTCCTCATGATGATTCAGATTTAATAATAAAGGAGAGATTTCCTGTGCCTCGCCTGGTTGTTTGTGATCAGCATGGCTCTCAGGCTCGATTTCTACTAGCAAAGTTAAACCCTTCTGCTACTTATAACACTGAATCTTATAATCCTGGAGGGGATATTATCTTTACCGATGATGTTAGCTTTGAGGTCTTCCTGGATCACTTACAGAGATTAGTAGTTCAATAA
Predicted protein sequences of Glyma16g09225
>Glyma16g09225.1   sequence type=predicted peptide   gene model=Glyma16g09225   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAEFLDLESQDGVRMPWNVIPGTKQDAQNAVVPVSAVYTPIKHFTSMPLLNYSPLRCRTCRSVLNPFCIVDFAAKIWICPFCFQRNHFPPHYASISDDSLPAELFPQYTTVEYNSDAVGPTNTPSVPPVFLFVVDTCVIEEEIGFLRSALAQAVELLPENSLVGLITFGMFAHVHELGFGAVPKTYVFKGSKDVTKDQLLEQMSFFAKKPRPAVGVVAGARDGLSTESISRFLVPASECEFTLNSVLEELQKDPWAVPADQRAARCTSTALSIAASLLGACVPGSAARIMAFIGGPATEGPAPIVSKQLSEPIRSHKDLDKDSVPHYHNCVKFYDGLSKQLVHQGHVLDLFACALDQVGIAELKTAVERTGGLVVLAESFGHSVFKDSLKRVFQSGDYDLGLSSNGIFEINCSKDLKVQGIIGPCASLEKKGPLCSDVVIGQGGTSAWKMCGLDKSTSLCLFFDVVRKETPDATMQSTSNQFYFQFLTYYQNNSGQMRLRVTTLSRRWVAGPESIQDLIAGFDQEAAAIVMARQVSFKMETEAEFDPIRWLDKALINLCSRFGEFQKDTPSSFSLSPRLSIFPQFMFHLRRSQFVQVFNNSPDETAYFRMILNRENVTNSVVMVQPSLICYSFHAGPEPALLDVAAIAADKILLLDSFFTVVIFHGSTIAQWRKAGYHNEPEHQAFAQLLLAPHDDSDLIIKERFPVPRLVVCDQHGSQARFLLAKLNPSATYNTESYNPGGDIIFTDDVSFEVFLDHLQRLVVQ*






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