SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G17690 | AT | Annotation by Michelle Graham. TAIR10: like heterochromatin protein (LHP1) | chr5:5827504-5829537 REVERSE LENGTH=445 | SoyBase | E_val: 1.00E-65 | ISS |
| GO:0000956 | GO-bp | Annotation by Michelle Graham. GO Biological Process: nuclear-transcribed mRNA catabolic process | SoyBase | N/A | ISS |
| GO:0006325 | GO-bp | Annotation by Michelle Graham. GO Biological Process: chromatin organization | SoyBase | N/A | ISS |
| GO:0006342 | GO-bp | Annotation by Michelle Graham. GO Biological Process: chromatin silencing | SoyBase | N/A | ISS |
| GO:0006346 | GO-bp | Annotation by Michelle Graham. GO Biological Process: methylation-dependent chromatin silencing | SoyBase | N/A | ISS |
| GO:0007346 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of mitotic cell cycle | SoyBase | N/A | ISS |
| GO:0009648 | GO-bp | Annotation by Michelle Graham. GO Biological Process: photoperiodism | SoyBase | N/A | ISS |
| GO:0009825 | GO-bp | Annotation by Michelle Graham. GO Biological Process: multidimensional cell growth | SoyBase | N/A | ISS |
| GO:0009910 | GO-bp | Annotation by Michelle Graham. GO Biological Process: negative regulation of flower development | SoyBase | N/A | ISS |
| GO:0010016 | GO-bp | Annotation by Michelle Graham. GO Biological Process: shoot morphogenesis | SoyBase | N/A | ISS |
| GO:0010048 | GO-bp | Annotation by Michelle Graham. GO Biological Process: vernalization response | SoyBase | N/A | ISS |
| GO:0016246 | GO-bp | Annotation by Michelle Graham. GO Biological Process: RNA interference | SoyBase | N/A | ISS |
| GO:0031048 | GO-bp | Annotation by Michelle Graham. GO Biological Process: chromatin silencing by small RNA | SoyBase | N/A | ISS |
| GO:0045814 | GO-bp | Annotation by Michelle Graham. GO Biological Process: negative regulation of gene expression, epigenetic | SoyBase | N/A | ISS |
| GO:0045857 | GO-bp | Annotation by Michelle Graham. GO Biological Process: negative regulation of molecular function, epigenetic | SoyBase | N/A | ISS |
| GO:0048573 | GO-bp | Annotation by Michelle Graham. GO Biological Process: photoperiodism, flowering | SoyBase | N/A | ISS |
| GO:0051567 | GO-bp | Annotation by Michelle Graham. GO Biological Process: histone H3-K9 methylation | SoyBase | N/A | ISS |
| GO:0000791 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: euchromatin | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0005720 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nuclear heterochromatin | SoyBase | N/A | ISS |
| GO:0003677 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: DNA binding | SoyBase | N/A | ISS |
| GO:0005515 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein binding | SoyBase | N/A | ISS |
| GO:0035064 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: methylated histone residue binding | SoyBase | N/A | ISS |
| PTHR22812 | Panther | CHROMOBOX PROTEIN | JGI | ISS | |
| PTHR22812:SF2 | Panther | CHROMOBOX POLYCOMB - RELATED | JGI | ISS | |
| PF00385 | PFAM | chromo' (CHRromatin Organisation MOdifier) domain | JGI | ISS | |
| UniRef100_A7M6G0 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Terminal flower 2 protein n=1 Tax=Malus x domestica RepID=A7M6G0_MALDO | SoyBase | E_val: 6.00E-90 | ISS |
| UniRef100_UPI000233AF21 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233AF21 related cluster n=1 Tax=unknown RepID=UPI000233AF21 | SoyBase | E_val: 0 | ISS |
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Glyma16g08860 not represented in the dataset |
Glyma16g08860 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.16g079900 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma16g08860.2 sequence type=CDS gene model=Glyma16g08860 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAAGAGGAAGAAAAGGCAAAAAATCTTAACAAAAAAGGGAAAAAGGGGCGAATGGAGAAAAGCGTTAAATAAAAAACCGGAGCGATGGATCACACTTTTCGGTATAGATGGACAACTCATCACCTCAGACTCTCGGAGAGAATGGACACAACTTTTGATTTGTTGCTTCCTCCGCTCTGAAGCTGAAGCTGTTTCTGTTGTGCTAAGAAAAAAAACAAAAAACAAAACAGATATAGGGAGAAAGAGAAGAAAAAAAGAACATAGTTTCTTTCAGGGTTGCTCCTTTTCGATTCTTGTTGCGTTTTTGTTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGCTGCTGCTGCTGCAATGAAGGGTGGTGGTGGGAAGAGAAAGGCTTCTACCTCGGAGGCTCCGAACGATGTTGTTGTTGTTGTTGCTGCTGCTTCTGCTCCTTCTGATGATGCTGATTTGGGTGTTGGAGATGTCGGGGGTGTGAAAGTTCAAAACTTTGAGGGAAACGAGGGTACCCAGTTGCGGAATACTGAAGAACAGGAAGAAGAACCCCACCACGTGGAGGGTGATGAAGGAGGAGAAGACGAAGAAGATTATGCCGAGGGAGAGGAAGAATATGAAGAAGAAAATGGTGGTGCTGTTGCTGGGGGACAACAAGGTTTTCCTGCTCTTGGTGAAAATTTCTTTGAAGTTGAAGCCATACGTCGTAAGAGGTTGCGCAAGGGTGAGGTGCAATACTTAATCAAATGGAATGGGTGGCCCGAGACAGCCAACACTTGGGAGCCTCTGGAAAATCTAGAGTCTGTTCCTGATGTTGTTGAAGCTTTTGAGGAGAGCTTGAAGTCCGGAAAACATCGTAAGCGCAAACGCAAGCATGTAGTGCATCATACTCAACCCAAGAAGCGGCTGGAGCGTTCGACAACTCCTTACAGCCTTCGGCGTTTTTCAACTAGTACAGCTGAGAACCATACACAGTCTGCTCCTCCTCTTAATGATCCTAGCCTTCCAGATATTCCCGCCTTCCCTCACACTGTGCTGTTTTCTGATGATGTGGGAAATGGTGCTGAAGGCAGCAGTCTTAGAAAAGCCACACCCAGTAATGCTAACAGGTCTGCAAATGGTTCAGAACAAAATATTAAAAGGAATGAGGAAAATGATTATGATCCTGTGCTTAGTGAGCTTAAAGCTATGACTTCTAATGGGAATGATGCAGACAGGCTTGCAATACGGATTCCAGAAGCTAAGGGTTCTGGGCCTTCTGGCAGTAATGGTCAAATGGATGCTAAATCAAAGGGGGCTTGCATGGAAACAAGTGAAAGTGACCGCTGCCGGGGATCCAAAAGGAGAAAATGTGGTTCCGTAAAGAGGTTCAAGAAAGAACTATATGCTAATGAGCCTGCTAATGCGGAAAATCCAGTTAGCATGCCTGTTGGTACAGCTGAGCCAGAACGAACAAGAGATGCTGGTAGTGGTGGCAATACTAATCATGCCAGACCTGCTAGCAATATTGTAAACATTGTAAAGCCAGTAGGCTATTCAGCTTCAGTAGCCAGTGGAATGCAGGATGTTTTAGTAACCTTTGTGGCTTCAAAGTCTGATGGAACAGAAGTGATGGTTGACAACAAGTATCTAAAAGCATTTAATCCACTTCTTCTGATCAATTTCTATGAGCAGCATCTTCGCTACAGCCCTACATTGTGA
>Glyma16g08860.2 sequence type=predicted peptide gene model=Glyma16g08860 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MKRKKRQKILTKKGKRGEWRKALNKKPERWITLFGIDGQLITSDSRREWTQLLICCFLRSEAEAVSVVLRKKTKNKTDIGRKRRKKEHSFFQGCSFSILVAFLFVVVVVVVVVAAAAAMKGGGGKRKASTSEAPNDVVVVVAAASAPSDDADLGVGDVGGVKVQNFEGNEGTQLRNTEEQEEEPHHVEGDEGGEDEEDYAEGEEEYEEENGGAVAGGQQGFPALGENFFEVEAIRRKRLRKGEVQYLIKWNGWPETANTWEPLENLESVPDVVEAFEESLKSGKHRKRKRKHVVHHTQPKKRLERSTTPYSLRRFSTSTAENHTQSAPPLNDPSLPDIPAFPHTVLFSDDVGNGAEGSSLRKATPSNANRSANGSEQNIKRNEENDYDPVLSELKAMTSNGNDADRLAIRIPEAKGSGPSGSNGQMDAKSKGACMETSESDRCRGSKRRKCGSVKRFKKELYANEPANAENPVSMPVGTAEPERTRDAGSGGNTNHARPASNIVNIVKPVGYSASVASGMQDVLVTFVASKSDGTEVMVDNKYLKAFNPLLLINFYEQHLRYSPTL*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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