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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G37410 | AT | Annotation by Michelle Graham. TAIR10: translocase inner membrane subunit 17-2 | chr2:15698119-15698850 REVERSE LENGTH=243 | SoyBase | E_val: 5.00E-93 | ISS |
| GO:0015031 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein transport | SoyBase | N/A | ISS |
| GO:0045039 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein import into mitochondrial inner membrane | SoyBase | N/A | ISS |
| GO:0048573 | GO-bp | Annotation by Michelle Graham. GO Biological Process: photoperiodism, flowering | SoyBase | N/A | ISS |
| GO:0051604 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein maturation | SoyBase | N/A | ISS |
| GO:0005739 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion | SoyBase | N/A | ISS |
| GO:0005741 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: mitochondrial outer membrane | SoyBase | N/A | ISS |
| GO:0005743 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: mitochondrial inner membrane | SoyBase | N/A | ISS |
| GO:0005744 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: mitochondrial inner membrane presequence translocase complex | SoyBase | N/A | ISS |
| GO:0015450 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: P-P-bond-hydrolysis-driven protein transmembrane transporter activity | SoyBase | N/A | ISS |
| KOG1652 | KOG | Mitochondrial import inner membrane translocase, subunit TIM17 | JGI | ISS | |
| PTHR10485 | Panther | MITOCHONDRIAL IMPORT INNER MEMBRANE TRANSLOCASE SUBUNIT TIM17 | JGI | ISS | |
| PF02466 | PFAM | Tim17/Tim22/Tim23 family | JGI | ISS | |
| UniRef100_B9RKH3 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Mitochondrial import inner membrane translocase subunit tim17, putative n=1 Tax=Ricinus communis RepID=B9RKH3_RICCO | SoyBase | E_val: 4.00E-99 | ISS |
| UniRef100_I1MM17 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MM17_SOYBN | SoyBase | E_val: 1.00E-141 | ISS |
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Glyma16g08520 not represented in the dataset |
Glyma16g08520 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma01g01110 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.16g078500 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma16g08520.3 sequence type=transcript gene model=Glyma16g08520 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high GGAACAAGTAATAAACAAATAGTAGCATGCGTGTGGGTATATTCCTGGATCGGCTCTTTCCTCAACAACGCCGCGTGCAGTCCCAACCCTAGGCAGAGAGAAAATTCCCCAAATCACAAACCCTAGATTGAGAGAAACCCTAACACGCCATGGGAACACCCGAGACATCTCGCGAACCCTGCCCCGATCGCATCCTCGACGACATAGGCGGCGCCTTCGGCATGGGAGCGGTGGGTGGCTCCGCCTTCCATTTTCTCAAGGGTCTCTACAATTCCCCCAAGGGCGATCGATTCGTCGGCGCCACCCAGGCCGTGCGCCTTAACGCCCCCCGCGTCGGCGGCAGCTTCGCCGTCTGGGGCGGCCTCTTCTCCGCCTTTGACTGCACCATGGTCTACGCTCGCCAGAAGGAGGACCCCTGGAACTCCATCGTCGCCGGCGCCGCCACTGGCGGCTTCCTCTCTATGCGCCAGGGCCTCGGCGCCTCCGCCCGCTCCGCGGCATTCGGCGGCGTCCTCCTCGCCCTCATCGAGGGCGCCGGGATCATGCTCAACAAGTTCCTCAGCGCGCAGCAGCCCATGCCTATGATCATGGACGAGCCGCAGCCGCAGCCTCCGCAGTCGTCCGAGCAGCCGTGGCTCGGAGGGTGGTTCGGTGGAGGGAACAGAGAGGAGACCGCCGGCAGCGGCGGAAGCGAGACGAAGATTCTGGAGAGTTTCGATGCTCCCCCTGTGCCCAATTTTGAGTATAAATGAGGTCAGGACTCCATTCTTTAAGTACATCGTGGTTTCTCTTTATCAACTGGGAAGATTAGATGTTTAGTGAATTCACCAGTGTTAGCTTGGCACTTTACATGAGGGTTTCTTGGCAGAGCAAACCATTCTGCCATCTGACATGGCAGCAATGAGAATTACATGTATCTCTCTCGGCACTTGGAATAAGATATTGGACGTCGGATGCGGACACACAACAAATGAGAATTACAGCCATATCATTCAATGCACAAGTACAGATAGCATGAGTCTGGCTTTGGAATCTCGAAATGGTGTTGTTGGCAGTTGTGACCTGACAGGCCTGTGGGTGTTCAAATCTCACGATGGAAATGTGGTTAAAGAAAATTGAAAAGCTGAGGTTGAAAATGGAGAAGAAAAGAAACAAAATTTGCTGCTAATAATGTTGCTGATGTCGTGGATTGGTTTTGAAGTTTATGCAATGAGTAAAATGTAGCAGTGGATTTAGTGTCTTTTTTTTGTTAATGAAGTGGTAAATCCATTTGCCAATTGTAATGACTGGCTGAATATAGATTGTGTAATCCTTTTGACTTTCAATGAATGAAAGTTTGTGGATAAAATCCCCTTACG >Glyma16g08520.4 sequence type=transcript gene model=Glyma16g08520 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high AAACAAATAGTAGCATGCGTGTGGGTATATTCCTGGATCGGCTCTTTCCTCAACAACGCCGCGTGCAGTCCCAACCCTAGGCAGAGAGAAAATTCCCCAAATCACAAACCCTAGATTGAGAGAAACCCTAACACGCCATGGGAACACCCGAGACATCTCGCGAACCCTGCCCCGATCGCATCCTCGACGACATAGGCGGCGCCTTCGGCATGGGAGCGGTGGGTGGCTCCGCCTTCCATTTTCTCAAGGGTCTCTACAATTCCCCCAAGGGCGATCGATTCGTCGGCGCCACCCAGGCCGTGCGCCTTAACGCCCCCCGCGTCGGCGGCAGCTTCGCCGTCTGGGGCGGCCTCTTCTCCGCCTTTGACTGCACCATGGTCTACGCTCGCCAGAAGGAGGACCCCTGGAACTCCATCGTCGCCGGCGCCGCCACTGGCGGCTTCCTCTCTATGCGCCAGGGCCTCGGCGCCTCCGCCCGCTCCGCGGCATTCGGCGGCGTCCTCCTCGCCCTCATCGAGGGCGCCGGGATCATGCTCAACAAGTTCCTCAGCGCGCAGCAGCCCATGCCTATGATCATGGACGAGCCGCAGCCGCAGCCTCCGCAGTCGTCCGAGCAGCCGTGGCTCGGAGGGTGGTTCGGTGGAGGGAACAGAGAGGAGACCGCCGGCAGCGGCGGAAGCGAGACGAAGATTCTGGAGAGTTTCGATGCTCCCCCTGTGCCCAATTTTGAGTATAAATGAGGTCAGGACTCCATTCTTTAAGTACATCGTGGTTTCTCTTTATCAACTGGGAAGATTAGATGTTTAGTGAATTCACCAGTGTTAGCTTGGCACTTTACATGAGGGAGTTGGACACGACCACCCTCAATCCAATTCGTGTCATGCAAGACCCTTATCCTGGTGTGACACAAATCCACACGTGCATCTTTGTGCCACTAGCCCCAACTATCGTGAGAGAAGGGATATTAGATCAACAAATTTGGTTTGATGGTGGTGGTTGGATTTAGTTGCGTGGTGGTGGGTTGGGTTTAGTTGTACAATGATCGGTGGTGGTTGGGTTTGGTTGTGCAGTGGTCAATGGTGGTGGTGGTGGTTGGGTTTGGTTGTGTGGTGGTTGGTGGTGGTTTTATGTAGTGAACTTAGATTGTTCTATGGCAAGGCCATGGGGTACTGAGAACTGATGTAGAATAATGTTTTCTTCATTGTTTATAATAATATCTGATGTAAAAAAAAAAAGTTGAAAAAAAACTAGCCCTCTCCTCATTAACATGTGTAGGCTCGAATTAGGTTCAGGTTATTCGTCAGAAATAACACATTTTAATTTTGCGATTTTGTAGAAATGAATTTTGAACATTT
>Glyma16g08520.2 sequence type=CDS gene model=Glyma16g08520 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGGAACACCCGAGACATCTCGCGAACCCTGCCCCGATCGCATCCTCGACGACATAGGCGGCGCCTTCGGCATGGGAGCGGTGGGTGGCTCCGCCTTCCATTTTCTCAAGGGTCTCTACAATTCCCCCAAGGGCGATCGATTCGTCGGCGCCACCCAGGCCGTGCGCCTTAACGCCCCCCGCGTCGGCGGCAGCTTCGCCGTCTGGGGCGGCCTCTTCTCCGCCTTTGACTGCACCATGGTCTACGCTCGCCAGAAGGAGGACCCCTGGAACTCCATCGTCGCCGGCGCCGCCACTGGCGGCTTCCTCTCTATGCGCCAGGGCCTCGGCGCCTCCGCCCGCTCCGCGGCATTCGGCGGCGTCCTCCTCGCCCTCATCGAGGGCGCCGGGATCATGCTCAACAAGTTCCTCAGCGCGCAGCAGCCCATGCCTATGATCATGGACGAGCCGCAGCCGCAGCCTCCGCAGTCGTCCGAGCAGCCGTGGCTCGGAGGGTGGTTCGGTGGAGGGAACAGAGAGGAGACCGCCGGCAGCGGCGGAAGCGAGACGAAGATTCTGGAGAGTTTCGATGCTCCCCCTGTGCCCAATTTTGAGTATAAATGA >Glyma16g08520.3 sequence type=CDS gene model=Glyma16g08520 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGGAACACCCGAGACATCTCGCGAACCCTGCCCCGATCGCATCCTCGACGACATAGGCGGCGCCTTCGGCATGGGAGCGGTGGGTGGCTCCGCCTTCCATTTTCTCAAGGGTCTCTACAATTCCCCCAAGGGCGATCGATTCGTCGGCGCCACCCAGGCCGTGCGCCTTAACGCCCCCCGCGTCGGCGGCAGCTTCGCCGTCTGGGGCGGCCTCTTCTCCGCCTTTGACTGCACCATGGTCTACGCTCGCCAGAAGGAGGACCCCTGGAACTCCATCGTCGCCGGCGCCGCCACTGGCGGCTTCCTCTCTATGCGCCAGGGCCTCGGCGCCTCCGCCCGCTCCGCGGCATTCGGCGGCGTCCTCCTCGCCCTCATCGAGGGCGCCGGGATCATGCTCAACAAGTTCCTCAGCGCGCAGCAGCCCATGCCTATGATCATGGACGAGCCGCAGCCGCAGCCTCCGCAGTCGTCCGAGCAGCCGTGGCTCGGAGGGTGGTTCGGTGGAGGGAACAGAGAGGAGACCGCCGGCAGCGGCGGAAGCGAGACGAAGATTCTGGAGAGTTTCGATGCTCCCCCTGTGCCCAATTTTGAGTATAAATGA >Glyma16g08520.4 sequence type=CDS gene model=Glyma16g08520 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGGAACACCCGAGACATCTCGCGAACCCTGCCCCGATCGCATCCTCGACGACATAGGCGGCGCCTTCGGCATGGGAGCGGTGGGTGGCTCCGCCTTCCATTTTCTCAAGGGTCTCTACAATTCCCCCAAGGGCGATCGATTCGTCGGCGCCACCCAGGCCGTGCGCCTTAACGCCCCCCGCGTCGGCGGCAGCTTCGCCGTCTGGGGCGGCCTCTTCTCCGCCTTTGACTGCACCATGGTCTACGCTCGCCAGAAGGAGGACCCCTGGAACTCCATCGTCGCCGGCGCCGCCACTGGCGGCTTCCTCTCTATGCGCCAGGGCCTCGGCGCCTCCGCCCGCTCCGCGGCATTCGGCGGCGTCCTCCTCGCCCTCATCGAGGGCGCCGGGATCATGCTCAACAAGTTCCTCAGCGCGCAGCAGCCCATGCCTATGATCATGGACGAGCCGCAGCCGCAGCCTCCGCAGTCGTCCGAGCAGCCGTGGCTCGGAGGGTGGTTCGGTGGAGGGAACAGAGAGGAGACCGCCGGCAGCGGCGGAAGCGAGACGAAGATTCTGGAGAGTTTCGATGCTCCCCCTGTGCCCAATTTTGAGTATAAATGA
>Glyma16g08520.2 sequence type=predicted peptide gene model=Glyma16g08520 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MGTPETSREPCPDRILDDIGGAFGMGAVGGSAFHFLKGLYNSPKGDRFVGATQAVRLNAPRVGGSFAVWGGLFSAFDCTMVYARQKEDPWNSIVAGAATGGFLSMRQGLGASARSAAFGGVLLALIEGAGIMLNKFLSAQQPMPMIMDEPQPQPPQSSEQPWLGGWFGGGNREETAGSGGSETKILESFDAPPVPNFEYK* >Glyma16g08520.3 sequence type=predicted peptide gene model=Glyma16g08520 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MGTPETSREPCPDRILDDIGGAFGMGAVGGSAFHFLKGLYNSPKGDRFVGATQAVRLNAPRVGGSFAVWGGLFSAFDCTMVYARQKEDPWNSIVAGAATGGFLSMRQGLGASARSAAFGGVLLALIEGAGIMLNKFLSAQQPMPMIMDEPQPQPPQSSEQPWLGGWFGGGNREETAGSGGSETKILESFDAPPVPNFEYK* >Glyma16g08520.4 sequence type=predicted peptide gene model=Glyma16g08520 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MGTPETSREPCPDRILDDIGGAFGMGAVGGSAFHFLKGLYNSPKGDRFVGATQAVRLNAPRVGGSFAVWGGLFSAFDCTMVYARQKEDPWNSIVAGAATGGFLSMRQGLGASARSAAFGGVLLALIEGAGIMLNKFLSAQQPMPMIMDEPQPQPPQSSEQPWLGGWFGGGNREETAGSGGSETKILESFDAPPVPNFEYK*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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