Glyma16g08450 - SoyBase

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Report for Sequence Feature Glyma16g08450

Feature Type:	gene_model
Chromosome:	Gm16
Start:	7843723
stop:	7845962
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma16g08450

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G77180	AT	Annotation by Michelle Graham. TAIR10: chromatin protein family \| chr1:28999791-29001632 REVERSE LENGTH=613	SoyBase	E_val: 0	ISS
GO:0000956	GO-bp	Annotation by Michelle Graham. GO Biological Process: nuclear-transcribed mRNA catabolic process	SoyBase	N/A	ISS
GO:0006499	GO-bp	Annotation by Michelle Graham. GO Biological Process: N-terminal protein myristoylation	SoyBase	N/A	ISS
GO:0008380	GO-bp	Annotation by Michelle Graham. GO Biological Process: RNA splicing	SoyBase	N/A	ISS
GO:0009651	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to salt stress	SoyBase	N/A	ISS
GO:0009737	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to abscisic acid stimulus	SoyBase	N/A	ISS
GO:0010228	GO-bp	Annotation by Michelle Graham. GO Biological Process: vegetative to reproductive phase transition of meristem	SoyBase	N/A	ISS
GO:0010555	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to mannitol stimulus	SoyBase	N/A	ISS
GO:0042752	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of circadian rhythm	SoyBase	N/A	ISS
GO:0045893	GO-bp	Annotation by Michelle Graham. GO Biological Process: positive regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005730	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleolus	SoyBase	N/A	ISS
GO:0005515	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein binding	SoyBase	N/A	ISS
KOG2441	KOG	mRNA splicing factor/probable chromatin binding snw family nuclear protein	JGI		ISS
PTHR12096	Panther	NUCLEAR PROTEIN SKIP-RELATED	JGI		ISS
PF02731	PFAM	SKIP/SNW domain	JGI		ISS
UniRef100_I1MM07	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MM07_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q3I4X9	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: GAMYB-binding protein n=1 Tax=Glycine max RepID=Q3I4X9_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma16g08450

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma16g08450

Paralog	Evidence	Comments
Glyma01g01190	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma16g08450 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.16g077700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma16g08450

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma16g08450

Limit To All Plant Sequences

>Glyma16g08450.2   sequence type=CDS   gene model=Glyma16g08450   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCCACTCTCAAAGAGCTTCTTCCTCCTGCGAAATCCTCCTCCACTGCCTACTACGACCACACCAACGATCCATGGTTCAAGCAGCGTTTCTTCATCGGAGAGAAGGAGAAATGCGCCGCTGCGGCGCCGACTAAAGACGACGACGTTTCCGACGACGAAACGCAGAAACAGATCGAGGAAACGATGCAGGAGACCAAGGCCGCTTTGGAGAAAATTGTGAACGTTAGGTTAAGCGCTGCGCAACCGAAGAACGTTCCGAAGCAGAACACCGATGCGAAGTATATAAAATACAAACCCTCACAGCAATCCGCGGCGTTCAATTCGGGTGCTAAGGAGAGGGTTATTAGGATGGTTGAGATGGCGGTGGATCCTCTTGAGCCTCCGAAGTTCAAGCACAAGCGTGTTCCCAAGGCGTCGGGGTCTCCGCCGGTGCCGGTGATGCACTCGCCGCCGCGGCCTGTGACGGTGAAGGATCAGCAGGATTGGAAGATTCCTCCCTGTATTTCGAATTGGAAGAATCCGAAGGGTTATACTATTCCTCTTGATAAGAGGCTTGCTGCTGATGGGAGAGGCCTTCAAGAGGTTCAGATTAATGACAATTTTGCGAAATTATCGGAGGCGCTGTATGTGGCGGAGCAGAAGGCGAGAGAGGCGGTTGCAATGAGGTCTAAGGTGCAGAAGGAGATGATGTTGAAGGAGAAGGAGAGGAAGGAGCAGGAGTTGAGGGCATTGGCACAGAAGGCGCGGTCGGAGAGAATTGGAGGGGAGAGAATTGGGGTTGTACCAGCGGCACCACCAATTGATTATGATCATGAGAAGGAGAATCCGAGGGAGAGGGAGAGGGAGAGGAGTTTTGTGAAGGAGAGTAGAGATGAGAGGGAGGAGAGGATGCAGCGTGAGAAAATTCGCGAGGAGAGGAGGAAGGAGAGGGAGAGGGAGAGAAGATTGGAGGCTAAGGATGCTGCTATGGGGAAGAGGAGCAAGATTACGCGCGATAGGGATCGTGATATCAGTGAAAAAGTTGCTCTTGGTATGGCTTCTACCAAGCCGGGTACTGAGGTTATGTATGATGAGAGGCTGTTTAACCAGGATAAGGGAATTGCGTCTGGGTTTGCCACTGATGATCAGTACAATGTGTATGAGCATGGGTTGTTTACTGCGCAGCCCACACTTTCCACATTGTATAGGCCGAAGAAGAATATTGATGATGAGACTTATGGAGGTGCGGATGAGCAGTTGGAGAAGATTATGAAGACTGATAGGTTTAAGCCCGATAAAGGGTTTTCTGGGGCTTCTGAGAGGGCTGGTCCAAGGGATCGGCCGGTTGAGTTTGAGAATGAGGAGGCTGATCCATTTGGTTTGGATCAGTTCTTGACTGAGGTGAAGAAGGGTAAGAAGGCCATGGAGAAAGTGGGTGGTGGAGGGACTATGAGGGCAAGTGCTGGATCATCGATGCGGGATGGTAATGAGGGAGGTTCAGGTAGGACTCGCATTGGATTTGAAAGAGGGCATTAG

Predicted protein sequences of Glyma16g08450

Limit To All Plant Sequences

>Glyma16g08450.2   sequence type=predicted peptide   gene model=Glyma16g08450   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MATLKELLPPAKSSSTAYYDHTNDPWFKQRFFIGEKEKCAAAAPTKDDDVSDDETQKQIEETMQETKAALEKIVNVRLSAAQPKNVPKQNTDAKYIKYKPSQQSAAFNSGAKERVIRMVEMAVDPLEPPKFKHKRVPKASGSPPVPVMHSPPRPVTVKDQQDWKIPPCISNWKNPKGYTIPLDKRLAADGRGLQEVQINDNFAKLSEALYVAEQKAREAVAMRSKVQKEMMLKEKERKEQELRALAQKARSERIGGERIGVVPAAPPIDYDHEKENPRERERERSFVKESRDEREERMQREKIREERRKERERERRLEAKDAAMGKRSKITRDRDRDISEKVALGMASTKPGTEVMYDERLFNQDKGIASGFATDDQYNVYEHGLFTAQPTLSTLYRPKKNIDDETYGGADEQLEKIMKTDRFKPDKGFSGASERAGPRDRPVEFENEEADPFGLDQFLTEVKKGKKAMEKVGGGGTMRASAGSSMRDGNEGGSGRTRIGFERGH*

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