Report for Sequence Feature Glyma16g07850
Feature Type: gene_model
Chromosome: Gm16
Start: 7119319
stop: 7127410
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma16g07850
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT3G27730 AT
Annotation by Michelle Graham. TAIR10: ATP binding;ATP-dependent helicases;DNA helicases | chr3:10273952-10280213 REVERSE LENGTH=1133
SoyBase E_val: 0 ISS
GO:0000911 GO-bp
Annotation by Michelle Graham. GO Biological Process: cytokinesis by cell plate formation
SoyBase N/A ISS
GO:0006302 GO-bp
Annotation by Michelle Graham. GO Biological Process: double-strand break repair
SoyBase N/A ISS
GO:0006312 GO-bp
Annotation by Michelle Graham. GO Biological Process: mitotic recombination
SoyBase N/A ISS
GO:0007062 GO-bp
Annotation by Michelle Graham. GO Biological Process: sister chromatid cohesion
SoyBase N/A ISS
GO:0007129 GO-bp
Annotation by Michelle Graham. GO Biological Process: synapsis
SoyBase N/A ISS
GO:0007131 GO-bp
Annotation by Michelle Graham. GO Biological Process: reciprocal meiotic recombination
SoyBase N/A ISS
GO:0010564 GO-bp
Annotation by Michelle Graham. GO Biological Process: regulation of cell cycle process
SoyBase N/A ISS
GO:0042138 GO-bp
Annotation by Michelle Graham. GO Biological Process: meiotic DNA double-strand break formation
SoyBase N/A ISS
GO:0045132 GO-bp
Annotation by Michelle Graham. GO Biological Process: meiotic chromosome segregation
SoyBase N/A ISS
GO:0051026 GO-bp
Annotation by Michelle Graham. GO Biological Process: chiasma assembly
SoyBase N/A ISS
GO:0051322 GO-bp
Annotation by Michelle Graham. GO Biological Process: anaphase
SoyBase N/A ISS
GO:0005634 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: nucleus
SoyBase N/A ISS
GO:0000166 GO-mf
Annotation by Michelle Graham. GO Molecular Function: nucleotide binding
SoyBase N/A ISS
GO:0003676 GO-mf
Annotation by Michelle Graham. GO Molecular Function: nucleic acid binding
SoyBase N/A ISS
GO:0003678 GO-mf
Annotation by Michelle Graham. GO Molecular Function: DNA helicase activity
SoyBase N/A ISS
GO:0004386 GO-mf
Annotation by Michelle Graham. GO Molecular Function: helicase activity
SoyBase N/A ISS
GO:0005524 GO-mf
Annotation by Michelle Graham. GO Molecular Function: ATP binding
SoyBase N/A ISS
GO:0008026 GO-mf
Annotation by Michelle Graham. GO Molecular Function: ATP-dependent helicase activity
SoyBase N/A ISS
GO:0017111 GO-mf
Annotation by Michelle Graham. GO Molecular Function: nucleoside-triphosphatase activity
SoyBase N/A ISS
KOG0952
KOG
DNA/RNA helicase MER3/SLH1, DEAD-box superfamily
JGI ISS
PTHR11752 Panther
HELICASE SKI2W
JGI ISS
PTHR11752:SF4 Panther
DEAD/DEAH BOX HELICASE-RELATED
JGI ISS
PF00270 PFAM
DEAD/DEAH box helicase
JGI ISS
PF00271 PFAM
Helicase conserved C-terminal domain
JGI ISS
PF02889 PFAM
Sec63 Brl domain
JGI ISS
UniRef100_B9SF96 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Pentatricopeptide repeat-containing protein, putative n=1 Tax=Ricinus communis RepID=B9SF96_RICCO
SoyBase E_val: 0 ISS
UniRef100_UPI000233AD8D UniRef
Annotation by Michelle Graham. Best UniRef hit: UPI000233AD8D related cluster n=1 Tax=unknown RepID=UPI000233AD8D
SoyBase E_val: 0 ISS
Expression Patterns of Glyma16g07850
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Gene model name correspondences to Glyma16g07850 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.16g072300 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma16g07850
Coding sequences of Glyma16g07850
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma16g07850.2 sequence type=CDS gene model=Glyma16g07850 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGATTCGTATTCTTTGAAGTCTGTGTTCGACTTGCCTGCACCATTTCGCTCATGTTTTAGTTTCAGATATTTTAATTCACTTCAGAGTGAATGCTTTCCTATCTGTTTCCACTCTGATGTAAACATGGTCATCTCTGCACCAACTGGGAGTGGTAAAACTGTACTCTTTGAACTTTGCATTTTGAGGCTACTCTCCAGTTTCATCACCGCAGAGGAAAGATTCTTACATTTAAAGGGATCTCTTAAAACAATCTATATAGCCCCATCTAAGGCTTTAGTACAGGAGAAGCTCCGTGATTGGAATAAGAAGTTTGGGCCGTGGGGAATAAATTGCCTGGAGTTAACAGGTGACAATGAATCTTACACTCCAAGGAATATACTAGAAGCTGATATTATTCTCACAACTCCTGAGAAATTTGATGCAGTGTCACGATATGGTATAGAAAGTGGTGGCTTGAGCTTTTTTAGTGACATATCACTTTTACTAATTGATGAAGTTCATCTATTGAATGATCCACGTGGAGCTGCTCTGGAAGCAATTGTTAGTAGAATTAAAATCGTTTCTGGCAATCCGAAAATGAAATCAAATCCTCTGGCTCAGGTCCGCTTCCTTGCTGTGTCTGCTACAATTCCAAATATTGAGGATCTAGCGAAGTGGCTTGAGGTTCCTGATCAAGGGATCAAAAGGTTTGGAGAAGAAATGAGGCCGGTAAAGCTGACAACCAAGGTTTTTGGCTATGCCCCAGCCAAGAATGACTTCCTCTTTGAGAAGCGCCTTCAAAATTATATTTTCGATATTCTCATGCAATACTCAAGAGGGAAATCTGCTCTTGTATTTTGTTCAACAAGAAAGGGAGCACAAGAAGCTGCTCAGCGACTCTCTCAAATAGTAATGACTTTTGGTCAATCAAATCCATTCATTAAGAACAGAGAACAACAAGATCGGCTGAGAGAGGCTTCTTTATCTTGCAGTGACAAGCAAATGCAGTCATATATTCTTTACGGTGTTGGTTATCACAATGGTGGGCTTTGCCTCAAAGATCGAAGTATTGTGGAAGGCCTTTTTCTCAAGGGTGACATTCAAGTACTTTGCACTACAAATACACTAGCCCATGGAATCAATCTCCCAGCACATACAGTGGTTATCAAATCAACACAGCACTTTAACAAGGAAAAAGGTCTCTATATGGAATATGACCGCTCTACTATATTGCAGATGTGTGGAAGGGCAGGCCGACCACCATTTGATGATACAGGCATGGTTATAATCATGACAAGGAGAGAAACGGTTCATTTGTATGAGAATCTCTTAAATGGGTGTGAAGTGGTGGAATCACAATTGCTGTCATGTGTGACGGAGCATTTACTTGCGGAAATAGTTCAACTGACAGTATCTGATATTACAAAAGCAATTGAATGGCTGAAACGCTCCTACTTGTACGTTAGAATGAAAAAGAACCCTATGAACTATGCAATTAAGAAAGGAATTTCTGGCGATCGTTTAGAGAAGCACGTGCAAGATATTTGTGTGCGTAAAGTTAACGAGTTATCACAGAATGATATGGTCTGGGTTGATGAAGATGGTTTCCTCTTGCGACCATTAGATCCTGGAAGGTTAATGACAAAGTACTATTTGAGATTTGACACAATGAAACAGATAATGCGGACTCCTGAAAATTGCAGTTTGGAAGATGCACTTCATGTTGTGTGTTGTGCAGAAGAAATTGCATGGATACAGCTCAGACGCAATGAGAAGAAACTCTTAAATGAGATCAATGCTGATAAAGATGGTCGGCTTCGCTTTCACATTCTTGGAGATAAAAGGAAAAAGAAGAAGCGCATTCAAACAAGAGAAGAAAAGATATTTATATTAGCAAATGACTGCTTAACCGGTGATCCATCAGTTCATGACCTATCGTTGATTCAGGACATGAATTCTATATGCTCAAATGGATGTAGAATTGCAAAATGCTTGAAAGACTATTTTGTTTATAAAAGGAATTACAAAGGAACTGTGAATTCAGCCCTTCTGGCCAAATCACTAGGCCAGAAGCTTTGGGATGACAGTCCATACCTTCTGAAACAGTTACCTGGAATTGGGATGGTTACAGCAAAGGCACTGCATTCAATGGGAGTTAGATCGTTTGAGGAACTTGCTGATGCTGATCCGAGGAGAATAGAGCTAGTGACTGGTCGAAAATACCCATTTGGTAACCATATTAAAGATTCTCTACTGTCTCTACCTCCAAAAGTTGATGTGACGCTTGCAGAGATTGAAAGCCATATACAAGGAAATTCCAAGCTAGTAGTAACATTGGCTAGGATATCACAGTCAGGCCAGTCAGTTAAACGACATTATGCTGATATGATCGTTGGTTCGGAGGAGGACAACACTATTCTCTTTCATGAAAAAATAAGGGTTGATCAGTTCTCCAGCCCATACAGTGCAACAATTTTTGTGCCCATCGCACAAGGGAAGCAAACCATCAAAGTTGATTTTATATTTGAGGAATACATTGGTATTGATGTCCACCAAAAACTTTCCTTTACGAGAGAGAGCAATTCAATTGTGCTTTTAAAAAGAAACAAGAAGCAGGCTTCTTGTCCTCCACCTGAAGAGATATATGTTATAGAAGATGATAACATAACTGTACCTCGTTTACCAACAAAAGAGCTATGCAAATTGAACGAGGACAGGGATTCCATTCCAAGTTTCGACCTCTTGGATGAAAGTTTTGAGGAAGTGGAAGGTGTGCGTGCTTTTGGGGTTGTAGAGGACGAATGCAAAAGCATCACCGAGAAAACAGTCTTTGACCACATTCGGGAGAAAGCCAAAAACTTTTCTCTCCTGTCTGCATATGATAACATTCACTTTCCATCACTAGAGGTCCTTCTTTCAAGAAATCATGCCCGTGAGAAGAGGCCTGATCATCGTCATGAGGTAGTTGTTCTGGATGATGAAGACAGACCTGAAGTTCCTCAACGAAATGATGTCAATTTGCAAGTTGAGCTGAGGAAGGCAGAACAAGATGATATCAAATTTTATCTGAACGATCATTGTACAACTGGAAGCTCTAATATAGTTGATACAGGTGTTTTCCTTCCTGAACCTGAAGCAATAACTCATGAAAAATCAACTGAAGAAACAGTTTTTGACCATATACGGAGAAAATCTAAGGATTTCCCACCGATTAATAAGCTTAATTGTGCGGAATCAATAATCCATAAAACGGAATTATTCTCAAAGATTAATCCTAGTCCTCCCAGTTCTTTGAGCGATGCTTTTGGTGTGGCAAGAGAGACGAATTCCTTAGAGGTCACCGATAATATGCTTACTTCATACATGAAAACTGCTGCTGAAGTAGAAAAATATACATCCAGTATTCAGGAGGAGAGAAAAAGGTCTTCAGATCCCGGAAGCTTTCCAGAGAGTAGTAAGAAGCAGCGTTGCGCTTCTAGAGACTCTAAAGAAGAGAAGCATAGTTCAAGTGAAATAAGAAGACAGTGCTGTTCTTTGGAAAGCACAAGCCAAATGAAGGAAATAGAGTCATTTCTTGGGTTCAAGAGTGTATTTTCCTTTCTCTAA
Predicted protein sequences of Glyma16g07850
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma16g07850.2 sequence type=predicted peptide gene model=Glyma16g07850 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MDSYSLKSVFDLPAPFRSCFSFRYFNSLQSECFPICFHSDVNMVISAPTGSGKTVLFELCILRLLSSFITAEERFLHLKGSLKTIYIAPSKALVQEKLRDWNKKFGPWGINCLELTGDNESYTPRNILEADIILTTPEKFDAVSRYGIESGGLSFFSDISLLLIDEVHLLNDPRGAALEAIVSRIKIVSGNPKMKSNPLAQVRFLAVSATIPNIEDLAKWLEVPDQGIKRFGEEMRPVKLTTKVFGYAPAKNDFLFEKRLQNYIFDILMQYSRGKSALVFCSTRKGAQEAAQRLSQIVMTFGQSNPFIKNREQQDRLREASLSCSDKQMQSYILYGVGYHNGGLCLKDRSIVEGLFLKGDIQVLCTTNTLAHGINLPAHTVVIKSTQHFNKEKGLYMEYDRSTILQMCGRAGRPPFDDTGMVIIMTRRETVHLYENLLNGCEVVESQLLSCVTEHLLAEIVQLTVSDITKAIEWLKRSYLYVRMKKNPMNYAIKKGISGDRLEKHVQDICVRKVNELSQNDMVWVDEDGFLLRPLDPGRLMTKYYLRFDTMKQIMRTPENCSLEDALHVVCCAEEIAWIQLRRNEKKLLNEINADKDGRLRFHILGDKRKKKKRIQTREEKIFILANDCLTGDPSVHDLSLIQDMNSICSNGCRIAKCLKDYFVYKRNYKGTVNSALLAKSLGQKLWDDSPYLLKQLPGIGMVTAKALHSMGVRSFEELADADPRRIELVTGRKYPFGNHIKDSLLSLPPKVDVTLAEIESHIQGNSKLVVTLARISQSGQSVKRHYADMIVGSEEDNTILFHEKIRVDQFSSPYSATIFVPIAQGKQTIKVDFIFEEYIGIDVHQKLSFTRESNSIVLLKRNKKQASCPPPEEIYVIEDDNITVPRLPTKELCKLNEDRDSIPSFDLLDESFEEVEGVRAFGVVEDECKSITEKTVFDHIREKAKNFSLLSAYDNIHFPSLEVLLSRNHAREKRPDHRHEVVVLDDEDRPEVPQRNDVNLQVELRKAEQDDIKFYLNDHCTTGSSNIVDTGVFLPEPEAITHEKSTEETVFDHIRRKSKDFPPINKLNCAESIIHKTELFSKINPSPPSSLSDAFGVARETNSLEVTDNMLTSYMKTAAEVEKYTSSIQEERKRSSDPGSFPESSKKQRCASRDSKEEKHSSSEIRRQCCSLESTSQMKEIESFLGFKSVFSFL*