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Report for Sequence Feature Glyma16g07850

Feature Type:gene_model
Chromosome:Gm16
Start:7119319
stop:7127410
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G27730AT Annotation by Michelle Graham. TAIR10: ATP binding;ATP-dependent helicases;DNA helicases | chr3:10273952-10280213 REVERSE LENGTH=1133 SoyBaseE_val: 0ISS
GO:0000911GO-bp Annotation by Michelle Graham. GO Biological Process: cytokinesis by cell plate formation SoyBaseN/AISS
GO:0006302GO-bp Annotation by Michelle Graham. GO Biological Process: double-strand break repair SoyBaseN/AISS
GO:0006312GO-bp Annotation by Michelle Graham. GO Biological Process: mitotic recombination SoyBaseN/AISS
GO:0007062GO-bp Annotation by Michelle Graham. GO Biological Process: sister chromatid cohesion SoyBaseN/AISS
GO:0007129GO-bp Annotation by Michelle Graham. GO Biological Process: synapsis SoyBaseN/AISS
GO:0007131GO-bp Annotation by Michelle Graham. GO Biological Process: reciprocal meiotic recombination SoyBaseN/AISS
GO:0010564GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of cell cycle process SoyBaseN/AISS
GO:0042138GO-bp Annotation by Michelle Graham. GO Biological Process: meiotic DNA double-strand break formation SoyBaseN/AISS
GO:0045132GO-bp Annotation by Michelle Graham. GO Biological Process: meiotic chromosome segregation SoyBaseN/AISS
GO:0051026GO-bp Annotation by Michelle Graham. GO Biological Process: chiasma assembly SoyBaseN/AISS
GO:0051322GO-bp Annotation by Michelle Graham. GO Biological Process: anaphase SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0000166GO-mf Annotation by Michelle Graham. GO Molecular Function: nucleotide binding SoyBaseN/AISS
GO:0003676GO-mf Annotation by Michelle Graham. GO Molecular Function: nucleic acid binding SoyBaseN/AISS
GO:0003678GO-mf Annotation by Michelle Graham. GO Molecular Function: DNA helicase activity SoyBaseN/AISS
GO:0004386GO-mf Annotation by Michelle Graham. GO Molecular Function: helicase activity SoyBaseN/AISS
GO:0005524GO-mf Annotation by Michelle Graham. GO Molecular Function: ATP binding SoyBaseN/AISS
GO:0008026GO-mf Annotation by Michelle Graham. GO Molecular Function: ATP-dependent helicase activity SoyBaseN/AISS
GO:0017111GO-mf Annotation by Michelle Graham. GO Molecular Function: nucleoside-triphosphatase activity SoyBaseN/AISS
KOG0952 KOG DNA/RNA helicase MER3/SLH1, DEAD-box superfamily JGI ISS
PTHR11752Panther HELICASE SKI2W JGI ISS
PTHR11752:SF4Panther DEAD/DEAH BOX HELICASE-RELATED JGI ISS
PF00270PFAM DEAD/DEAH box helicase JGI ISS
PF00271PFAM Helicase conserved C-terminal domain JGI ISS
PF02889PFAM Sec63 Brl domain JGI ISS
UniRef100_B9SF96UniRef Annotation by Michelle Graham. Most informative UniRef hit: Pentatricopeptide repeat-containing protein, putative n=1 Tax=Ricinus communis RepID=B9SF96_RICCO SoyBaseE_val: 0ISS
UniRef100_UPI000233AD8DUniRef Annotation by Michelle Graham. Best UniRef hit: UPI000233AD8D related cluster n=1 Tax=unknown RepID=UPI000233AD8D SoyBaseE_val: 0ISS

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Corresponding NameAnnotation VersionEvidenceComments
Glyma.16g072300 Wm82.a2.v1IGC As supplied by JGI

Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

>Glyma16g07850.2   sequence type=CDS   gene model=Glyma16g07850   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATTCGTATTCTTTGAAGTCTGTGTTCGACTTGCCTGCACCATTTCGCTCATGTTTTAGTTTCAGATATTTTAATTCACTTCAGAGTGAATGCTTTCCTATCTGTTTCCACTCTGATGTAAACATGGTCATCTCTGCACCAACTGGGAGTGGTAAAACTGTACTCTTTGAACTTTGCATTTTGAGGCTACTCTCCAGTTTCATCACCGCAGAGGAAAGATTCTTACATTTAAAGGGATCTCTTAAAACAATCTATATAGCCCCATCTAAGGCTTTAGTACAGGAGAAGCTCCGTGATTGGAATAAGAAGTTTGGGCCGTGGGGAATAAATTGCCTGGAGTTAACAGGTGACAATGAATCTTACACTCCAAGGAATATACTAGAAGCTGATATTATTCTCACAACTCCTGAGAAATTTGATGCAGTGTCACGATATGGTATAGAAAGTGGTGGCTTGAGCTTTTTTAGTGACATATCACTTTTACTAATTGATGAAGTTCATCTATTGAATGATCCACGTGGAGCTGCTCTGGAAGCAATTGTTAGTAGAATTAAAATCGTTTCTGGCAATCCGAAAATGAAATCAAATCCTCTGGCTCAGGTCCGCTTCCTTGCTGTGTCTGCTACAATTCCAAATATTGAGGATCTAGCGAAGTGGCTTGAGGTTCCTGATCAAGGGATCAAAAGGTTTGGAGAAGAAATGAGGCCGGTAAAGCTGACAACCAAGGTTTTTGGCTATGCCCCAGCCAAGAATGACTTCCTCTTTGAGAAGCGCCTTCAAAATTATATTTTCGATATTCTCATGCAATACTCAAGAGGGAAATCTGCTCTTGTATTTTGTTCAACAAGAAAGGGAGCACAAGAAGCTGCTCAGCGACTCTCTCAAATAGTAATGACTTTTGGTCAATCAAATCCATTCATTAAGAACAGAGAACAACAAGATCGGCTGAGAGAGGCTTCTTTATCTTGCAGTGACAAGCAAATGCAGTCATATATTCTTTACGGTGTTGGTTATCACAATGGTGGGCTTTGCCTCAAAGATCGAAGTATTGTGGAAGGCCTTTTTCTCAAGGGTGACATTCAAGTACTTTGCACTACAAATACACTAGCCCATGGAATCAATCTCCCAGCACATACAGTGGTTATCAAATCAACACAGCACTTTAACAAGGAAAAAGGTCTCTATATGGAATATGACCGCTCTACTATATTGCAGATGTGTGGAAGGGCAGGCCGACCACCATTTGATGATACAGGCATGGTTATAATCATGACAAGGAGAGAAACGGTTCATTTGTATGAGAATCTCTTAAATGGGTGTGAAGTGGTGGAATCACAATTGCTGTCATGTGTGACGGAGCATTTACTTGCGGAAATAGTTCAACTGACAGTATCTGATATTACAAAAGCAATTGAATGGCTGAAACGCTCCTACTTGTACGTTAGAATGAAAAAGAACCCTATGAACTATGCAATTAAGAAAGGAATTTCTGGCGATCGTTTAGAGAAGCACGTGCAAGATATTTGTGTGCGTAAAGTTAACGAGTTATCACAGAATGATATGGTCTGGGTTGATGAAGATGGTTTCCTCTTGCGACCATTAGATCCTGGAAGGTTAATGACAAAGTACTATTTGAGATTTGACACAATGAAACAGATAATGCGGACTCCTGAAAATTGCAGTTTGGAAGATGCACTTCATGTTGTGTGTTGTGCAGAAGAAATTGCATGGATACAGCTCAGACGCAATGAGAAGAAACTCTTAAATGAGATCAATGCTGATAAAGATGGTCGGCTTCGCTTTCACATTCTTGGAGATAAAAGGAAAAAGAAGAAGCGCATTCAAACAAGAGAAGAAAAGATATTTATATTAGCAAATGACTGCTTAACCGGTGATCCATCAGTTCATGACCTATCGTTGATTCAGGACATGAATTCTATATGCTCAAATGGATGTAGAATTGCAAAATGCTTGAAAGACTATTTTGTTTATAAAAGGAATTACAAAGGAACTGTGAATTCAGCCCTTCTGGCCAAATCACTAGGCCAGAAGCTTTGGGATGACAGTCCATACCTTCTGAAACAGTTACCTGGAATTGGGATGGTTACAGCAAAGGCACTGCATTCAATGGGAGTTAGATCGTTTGAGGAACTTGCTGATGCTGATCCGAGGAGAATAGAGCTAGTGACTGGTCGAAAATACCCATTTGGTAACCATATTAAAGATTCTCTACTGTCTCTACCTCCAAAAGTTGATGTGACGCTTGCAGAGATTGAAAGCCATATACAAGGAAATTCCAAGCTAGTAGTAACATTGGCTAGGATATCACAGTCAGGCCAGTCAGTTAAACGACATTATGCTGATATGATCGTTGGTTCGGAGGAGGACAACACTATTCTCTTTCATGAAAAAATAAGGGTTGATCAGTTCTCCAGCCCATACAGTGCAACAATTTTTGTGCCCATCGCACAAGGGAAGCAAACCATCAAAGTTGATTTTATATTTGAGGAATACATTGGTATTGATGTCCACCAAAAACTTTCCTTTACGAGAGAGAGCAATTCAATTGTGCTTTTAAAAAGAAACAAGAAGCAGGCTTCTTGTCCTCCACCTGAAGAGATATATGTTATAGAAGATGATAACATAACTGTACCTCGTTTACCAACAAAAGAGCTATGCAAATTGAACGAGGACAGGGATTCCATTCCAAGTTTCGACCTCTTGGATGAAAGTTTTGAGGAAGTGGAAGGTGTGCGTGCTTTTGGGGTTGTAGAGGACGAATGCAAAAGCATCACCGAGAAAACAGTCTTTGACCACATTCGGGAGAAAGCCAAAAACTTTTCTCTCCTGTCTGCATATGATAACATTCACTTTCCATCACTAGAGGTCCTTCTTTCAAGAAATCATGCCCGTGAGAAGAGGCCTGATCATCGTCATGAGGTAGTTGTTCTGGATGATGAAGACAGACCTGAAGTTCCTCAACGAAATGATGTCAATTTGCAAGTTGAGCTGAGGAAGGCAGAACAAGATGATATCAAATTTTATCTGAACGATCATTGTACAACTGGAAGCTCTAATATAGTTGATACAGGTGTTTTCCTTCCTGAACCTGAAGCAATAACTCATGAAAAATCAACTGAAGAAACAGTTTTTGACCATATACGGAGAAAATCTAAGGATTTCCCACCGATTAATAAGCTTAATTGTGCGGAATCAATAATCCATAAAACGGAATTATTCTCAAAGATTAATCCTAGTCCTCCCAGTTCTTTGAGCGATGCTTTTGGTGTGGCAAGAGAGACGAATTCCTTAGAGGTCACCGATAATATGCTTACTTCATACATGAAAACTGCTGCTGAAGTAGAAAAATATACATCCAGTATTCAGGAGGAGAGAAAAAGGTCTTCAGATCCCGGAAGCTTTCCAGAGAGTAGTAAGAAGCAGCGTTGCGCTTCTAGAGACTCTAAAGAAGAGAAGCATAGTTCAAGTGAAATAAGAAGACAGTGCTGTTCTTTGGAAAGCACAAGCCAAATGAAGGAAATAGAGTCATTTCTTGGGTTCAAGAGTGTATTTTCCTTTCTCTAA

>Glyma16g07850.2   sequence type=predicted peptide   gene model=Glyma16g07850   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDSYSLKSVFDLPAPFRSCFSFRYFNSLQSECFPICFHSDVNMVISAPTGSGKTVLFELCILRLLSSFITAEERFLHLKGSLKTIYIAPSKALVQEKLRDWNKKFGPWGINCLELTGDNESYTPRNILEADIILTTPEKFDAVSRYGIESGGLSFFSDISLLLIDEVHLLNDPRGAALEAIVSRIKIVSGNPKMKSNPLAQVRFLAVSATIPNIEDLAKWLEVPDQGIKRFGEEMRPVKLTTKVFGYAPAKNDFLFEKRLQNYIFDILMQYSRGKSALVFCSTRKGAQEAAQRLSQIVMTFGQSNPFIKNREQQDRLREASLSCSDKQMQSYILYGVGYHNGGLCLKDRSIVEGLFLKGDIQVLCTTNTLAHGINLPAHTVVIKSTQHFNKEKGLYMEYDRSTILQMCGRAGRPPFDDTGMVIIMTRRETVHLYENLLNGCEVVESQLLSCVTEHLLAEIVQLTVSDITKAIEWLKRSYLYVRMKKNPMNYAIKKGISGDRLEKHVQDICVRKVNELSQNDMVWVDEDGFLLRPLDPGRLMTKYYLRFDTMKQIMRTPENCSLEDALHVVCCAEEIAWIQLRRNEKKLLNEINADKDGRLRFHILGDKRKKKKRIQTREEKIFILANDCLTGDPSVHDLSLIQDMNSICSNGCRIAKCLKDYFVYKRNYKGTVNSALLAKSLGQKLWDDSPYLLKQLPGIGMVTAKALHSMGVRSFEELADADPRRIELVTGRKYPFGNHIKDSLLSLPPKVDVTLAEIESHIQGNSKLVVTLARISQSGQSVKRHYADMIVGSEEDNTILFHEKIRVDQFSSPYSATIFVPIAQGKQTIKVDFIFEEYIGIDVHQKLSFTRESNSIVLLKRNKKQASCPPPEEIYVIEDDNITVPRLPTKELCKLNEDRDSIPSFDLLDESFEEVEGVRAFGVVEDECKSITEKTVFDHIREKAKNFSLLSAYDNIHFPSLEVLLSRNHAREKRPDHRHEVVVLDDEDRPEVPQRNDVNLQVELRKAEQDDIKFYLNDHCTTGSSNIVDTGVFLPEPEAITHEKSTEETVFDHIRRKSKDFPPINKLNCAESIIHKTELFSKINPSPPSSLSDAFGVARETNSLEVTDNMLTSYMKTAAEVEKYTSSIQEERKRSSDPGSFPESSKKQRCASRDSKEEKHSSSEIRRQCCSLESTSQMKEIESFLGFKSVFSFL*







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