SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G27730 | AT | Annotation by Michelle Graham. TAIR10: ATP binding;ATP-dependent helicases;DNA helicases | chr3:10273952-10280213 REVERSE LENGTH=1133 | SoyBase | E_val: 0 | ISS |
| GO:0000911 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cytokinesis by cell plate formation | SoyBase | N/A | ISS |
| GO:0006302 | GO-bp | Annotation by Michelle Graham. GO Biological Process: double-strand break repair | SoyBase | N/A | ISS |
| GO:0006312 | GO-bp | Annotation by Michelle Graham. GO Biological Process: mitotic recombination | SoyBase | N/A | ISS |
| GO:0007062 | GO-bp | Annotation by Michelle Graham. GO Biological Process: sister chromatid cohesion | SoyBase | N/A | ISS |
| GO:0007129 | GO-bp | Annotation by Michelle Graham. GO Biological Process: synapsis | SoyBase | N/A | ISS |
| GO:0007131 | GO-bp | Annotation by Michelle Graham. GO Biological Process: reciprocal meiotic recombination | SoyBase | N/A | ISS |
| GO:0010564 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of cell cycle process | SoyBase | N/A | ISS |
| GO:0042138 | GO-bp | Annotation by Michelle Graham. GO Biological Process: meiotic DNA double-strand break formation | SoyBase | N/A | ISS |
| GO:0045132 | GO-bp | Annotation by Michelle Graham. GO Biological Process: meiotic chromosome segregation | SoyBase | N/A | ISS |
| GO:0051026 | GO-bp | Annotation by Michelle Graham. GO Biological Process: chiasma assembly | SoyBase | N/A | ISS |
| GO:0051322 | GO-bp | Annotation by Michelle Graham. GO Biological Process: anaphase | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0000166 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: nucleotide binding | SoyBase | N/A | ISS |
| GO:0003676 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: nucleic acid binding | SoyBase | N/A | ISS |
| GO:0003678 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: DNA helicase activity | SoyBase | N/A | ISS |
| GO:0004386 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: helicase activity | SoyBase | N/A | ISS |
| GO:0005524 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ATP binding | SoyBase | N/A | ISS |
| GO:0008026 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ATP-dependent helicase activity | SoyBase | N/A | ISS |
| GO:0017111 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: nucleoside-triphosphatase activity | SoyBase | N/A | ISS |
| KOG0952 | KOG | DNA/RNA helicase MER3/SLH1, DEAD-box superfamily | JGI | ISS | |
| PTHR11752 | Panther | HELICASE SKI2W | JGI | ISS | |
| PTHR11752:SF4 | Panther | DEAD/DEAH BOX HELICASE-RELATED | JGI | ISS | |
| PF00270 | PFAM | DEAD/DEAH box helicase | JGI | ISS | |
| PF00271 | PFAM | Helicase conserved C-terminal domain | JGI | ISS | |
| PF02889 | PFAM | Sec63 Brl domain | JGI | ISS | |
| UniRef100_B9SF96 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Pentatricopeptide repeat-containing protein, putative n=1 Tax=Ricinus communis RepID=B9SF96_RICCO | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI000233AD8D | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233AD8D related cluster n=1 Tax=unknown RepID=UPI000233AD8D | SoyBase | E_val: 0 | ISS |
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Glyma16g07850 not represented in the dataset |
Glyma16g07850 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.16g072300 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma16g07850.2 sequence type=CDS gene model=Glyma16g07850 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGATTCGTATTCTTTGAAGTCTGTGTTCGACTTGCCTGCACCATTTCGCTCATGTTTTAGTTTCAGATATTTTAATTCACTTCAGAGTGAATGCTTTCCTATCTGTTTCCACTCTGATGTAAACATGGTCATCTCTGCACCAACTGGGAGTGGTAAAACTGTACTCTTTGAACTTTGCATTTTGAGGCTACTCTCCAGTTTCATCACCGCAGAGGAAAGATTCTTACATTTAAAGGGATCTCTTAAAACAATCTATATAGCCCCATCTAAGGCTTTAGTACAGGAGAAGCTCCGTGATTGGAATAAGAAGTTTGGGCCGTGGGGAATAAATTGCCTGGAGTTAACAGGTGACAATGAATCTTACACTCCAAGGAATATACTAGAAGCTGATATTATTCTCACAACTCCTGAGAAATTTGATGCAGTGTCACGATATGGTATAGAAAGTGGTGGCTTGAGCTTTTTTAGTGACATATCACTTTTACTAATTGATGAAGTTCATCTATTGAATGATCCACGTGGAGCTGCTCTGGAAGCAATTGTTAGTAGAATTAAAATCGTTTCTGGCAATCCGAAAATGAAATCAAATCCTCTGGCTCAGGTCCGCTTCCTTGCTGTGTCTGCTACAATTCCAAATATTGAGGATCTAGCGAAGTGGCTTGAGGTTCCTGATCAAGGGATCAAAAGGTTTGGAGAAGAAATGAGGCCGGTAAAGCTGACAACCAAGGTTTTTGGCTATGCCCCAGCCAAGAATGACTTCCTCTTTGAGAAGCGCCTTCAAAATTATATTTTCGATATTCTCATGCAATACTCAAGAGGGAAATCTGCTCTTGTATTTTGTTCAACAAGAAAGGGAGCACAAGAAGCTGCTCAGCGACTCTCTCAAATAGTAATGACTTTTGGTCAATCAAATCCATTCATTAAGAACAGAGAACAACAAGATCGGCTGAGAGAGGCTTCTTTATCTTGCAGTGACAAGCAAATGCAGTCATATATTCTTTACGGTGTTGGTTATCACAATGGTGGGCTTTGCCTCAAAGATCGAAGTATTGTGGAAGGCCTTTTTCTCAAGGGTGACATTCAAGTACTTTGCACTACAAATACACTAGCCCATGGAATCAATCTCCCAGCACATACAGTGGTTATCAAATCAACACAGCACTTTAACAAGGAAAAAGGTCTCTATATGGAATATGACCGCTCTACTATATTGCAGATGTGTGGAAGGGCAGGCCGACCACCATTTGATGATACAGGCATGGTTATAATCATGACAAGGAGAGAAACGGTTCATTTGTATGAGAATCTCTTAAATGGGTGTGAAGTGGTGGAATCACAATTGCTGTCATGTGTGACGGAGCATTTACTTGCGGAAATAGTTCAACTGACAGTATCTGATATTACAAAAGCAATTGAATGGCTGAAACGCTCCTACTTGTACGTTAGAATGAAAAAGAACCCTATGAACTATGCAATTAAGAAAGGAATTTCTGGCGATCGTTTAGAGAAGCACGTGCAAGATATTTGTGTGCGTAAAGTTAACGAGTTATCACAGAATGATATGGTCTGGGTTGATGAAGATGGTTTCCTCTTGCGACCATTAGATCCTGGAAGGTTAATGACAAAGTACTATTTGAGATTTGACACAATGAAACAGATAATGCGGACTCCTGAAAATTGCAGTTTGGAAGATGCACTTCATGTTGTGTGTTGTGCAGAAGAAATTGCATGGATACAGCTCAGACGCAATGAGAAGAAACTCTTAAATGAGATCAATGCTGATAAAGATGGTCGGCTTCGCTTTCACATTCTTGGAGATAAAAGGAAAAAGAAGAAGCGCATTCAAACAAGAGAAGAAAAGATATTTATATTAGCAAATGACTGCTTAACCGGTGATCCATCAGTTCATGACCTATCGTTGATTCAGGACATGAATTCTATATGCTCAAATGGATGTAGAATTGCAAAATGCTTGAAAGACTATTTTGTTTATAAAAGGAATTACAAAGGAACTGTGAATTCAGCCCTTCTGGCCAAATCACTAGGCCAGAAGCTTTGGGATGACAGTCCATACCTTCTGAAACAGTTACCTGGAATTGGGATGGTTACAGCAAAGGCACTGCATTCAATGGGAGTTAGATCGTTTGAGGAACTTGCTGATGCTGATCCGAGGAGAATAGAGCTAGTGACTGGTCGAAAATACCCATTTGGTAACCATATTAAAGATTCTCTACTGTCTCTACCTCCAAAAGTTGATGTGACGCTTGCAGAGATTGAAAGCCATATACAAGGAAATTCCAAGCTAGTAGTAACATTGGCTAGGATATCACAGTCAGGCCAGTCAGTTAAACGACATTATGCTGATATGATCGTTGGTTCGGAGGAGGACAACACTATTCTCTTTCATGAAAAAATAAGGGTTGATCAGTTCTCCAGCCCATACAGTGCAACAATTTTTGTGCCCATCGCACAAGGGAAGCAAACCATCAAAGTTGATTTTATATTTGAGGAATACATTGGTATTGATGTCCACCAAAAACTTTCCTTTACGAGAGAGAGCAATTCAATTGTGCTTTTAAAAAGAAACAAGAAGCAGGCTTCTTGTCCTCCACCTGAAGAGATATATGTTATAGAAGATGATAACATAACTGTACCTCGTTTACCAACAAAAGAGCTATGCAAATTGAACGAGGACAGGGATTCCATTCCAAGTTTCGACCTCTTGGATGAAAGTTTTGAGGAAGTGGAAGGTGTGCGTGCTTTTGGGGTTGTAGAGGACGAATGCAAAAGCATCACCGAGAAAACAGTCTTTGACCACATTCGGGAGAAAGCCAAAAACTTTTCTCTCCTGTCTGCATATGATAACATTCACTTTCCATCACTAGAGGTCCTTCTTTCAAGAAATCATGCCCGTGAGAAGAGGCCTGATCATCGTCATGAGGTAGTTGTTCTGGATGATGAAGACAGACCTGAAGTTCCTCAACGAAATGATGTCAATTTGCAAGTTGAGCTGAGGAAGGCAGAACAAGATGATATCAAATTTTATCTGAACGATCATTGTACAACTGGAAGCTCTAATATAGTTGATACAGGTGTTTTCCTTCCTGAACCTGAAGCAATAACTCATGAAAAATCAACTGAAGAAACAGTTTTTGACCATATACGGAGAAAATCTAAGGATTTCCCACCGATTAATAAGCTTAATTGTGCGGAATCAATAATCCATAAAACGGAATTATTCTCAAAGATTAATCCTAGTCCTCCCAGTTCTTTGAGCGATGCTTTTGGTGTGGCAAGAGAGACGAATTCCTTAGAGGTCACCGATAATATGCTTACTTCATACATGAAAACTGCTGCTGAAGTAGAAAAATATACATCCAGTATTCAGGAGGAGAGAAAAAGGTCTTCAGATCCCGGAAGCTTTCCAGAGAGTAGTAAGAAGCAGCGTTGCGCTTCTAGAGACTCTAAAGAAGAGAAGCATAGTTCAAGTGAAATAAGAAGACAGTGCTGTTCTTTGGAAAGCACAAGCCAAATGAAGGAAATAGAGTCATTTCTTGGGTTCAAGAGTGTATTTTCCTTTCTCTAA
>Glyma16g07850.2 sequence type=predicted peptide gene model=Glyma16g07850 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MDSYSLKSVFDLPAPFRSCFSFRYFNSLQSECFPICFHSDVNMVISAPTGSGKTVLFELCILRLLSSFITAEERFLHLKGSLKTIYIAPSKALVQEKLRDWNKKFGPWGINCLELTGDNESYTPRNILEADIILTTPEKFDAVSRYGIESGGLSFFSDISLLLIDEVHLLNDPRGAALEAIVSRIKIVSGNPKMKSNPLAQVRFLAVSATIPNIEDLAKWLEVPDQGIKRFGEEMRPVKLTTKVFGYAPAKNDFLFEKRLQNYIFDILMQYSRGKSALVFCSTRKGAQEAAQRLSQIVMTFGQSNPFIKNREQQDRLREASLSCSDKQMQSYILYGVGYHNGGLCLKDRSIVEGLFLKGDIQVLCTTNTLAHGINLPAHTVVIKSTQHFNKEKGLYMEYDRSTILQMCGRAGRPPFDDTGMVIIMTRRETVHLYENLLNGCEVVESQLLSCVTEHLLAEIVQLTVSDITKAIEWLKRSYLYVRMKKNPMNYAIKKGISGDRLEKHVQDICVRKVNELSQNDMVWVDEDGFLLRPLDPGRLMTKYYLRFDTMKQIMRTPENCSLEDALHVVCCAEEIAWIQLRRNEKKLLNEINADKDGRLRFHILGDKRKKKKRIQTREEKIFILANDCLTGDPSVHDLSLIQDMNSICSNGCRIAKCLKDYFVYKRNYKGTVNSALLAKSLGQKLWDDSPYLLKQLPGIGMVTAKALHSMGVRSFEELADADPRRIELVTGRKYPFGNHIKDSLLSLPPKVDVTLAEIESHIQGNSKLVVTLARISQSGQSVKRHYADMIVGSEEDNTILFHEKIRVDQFSSPYSATIFVPIAQGKQTIKVDFIFEEYIGIDVHQKLSFTRESNSIVLLKRNKKQASCPPPEEIYVIEDDNITVPRLPTKELCKLNEDRDSIPSFDLLDESFEEVEGVRAFGVVEDECKSITEKTVFDHIREKAKNFSLLSAYDNIHFPSLEVLLSRNHAREKRPDHRHEVVVLDDEDRPEVPQRNDVNLQVELRKAEQDDIKFYLNDHCTTGSSNIVDTGVFLPEPEAITHEKSTEETVFDHIRRKSKDFPPINKLNCAESIIHKTELFSKINPSPPSSLSDAFGVARETNSLEVTDNMLTSYMKTAAEVEKYTSSIQEERKRSSDPGSFPESSKKQRCASRDSKEEKHSSSEIRRQCCSLESTSQMKEIESFLGFKSVFSFL*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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