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SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G14530 | AT | Annotation by Michelle Graham. TAIR10: Transducin/WD40 repeat-like superfamily protein | chr5:4684782-4686865 REVERSE LENGTH=330 | SoyBase | E_val: 0 | ISS |
| GO:0008150 | GO-bp | Annotation by Michelle Graham. GO Biological Process: biological process | SoyBase | N/A | ISS |
| GO:0048573 | GO-bp | Annotation by Michelle Graham. GO Biological Process: photoperiodism, flowering | SoyBase | N/A | ISS |
| GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
| GO:0080008 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: CUL4-RING ubiquitin ligase complex | SoyBase | N/A | ISS |
| GO:0000166 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: nucleotide binding | SoyBase | N/A | ISS |
| KOG1446 | KOG | Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 | JGI | ISS | |
| PTHR19861 | Panther | WD40 REPEAT PROTEIN SWD2 | JGI | ISS | |
| PF00400 | PFAM | WD domain, G-beta repeat | JGI | ISS | |
| UniRef100_B9S638 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: COMPASS component SWD2, putative n=1 Tax=Ricinus communis RepID=B9S638_RICCO | SoyBase | E_val: 0 | ISS |
| UniRef100_I1MLV4 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MLV4_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma16g07810 not represented in the dataset |
Glyma16g07810 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.16g071900 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma16g07810.2 sequence type=transcript gene model=Glyma16g07810 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high AACCGAATATCCCAACCTATCCCACTACTTAAGTGAAAACAACAGTGAAAAAGCATCGGCGGATTTTTCTGCTCTCTTACTTTCTTTCCACTCTGCTGCTACTTTGCTCCGCCAGCATGACGACGGCGTCGTTTACGGAGCTTGACGACGATTTGGTTCGAAGCATGTCCATAGGAGCCGTCTTCTCCGACTTCGGTGGGATGATACATTCGATTGATTTCCATCGAAAGGATGATTTACTTGTCACGTCTAGTGGGGATGACTCGGTGCGACTTTACGACATTGCTAATGCTAAGTTATTGAAGACCACTTCTAATAAGAAACATGGTACTGATCGTATATGTTTTACTCATCATCCAAGCTCTGTTATATGCTCTTCAAAGTACAATTTGGAGTCTACTGGAGAATCATTGCAGTATTTATCAATGTATGATAATCGCTGCCTACGATACTTCAAAGGGCATAAACAGAGAGTTGTTTCTCTCTGCATGTCTCCAATCAATGATAGCTTCATGTCTGGTTCTCTAGACCACAGTGTTAGGATATGGGATCTTCGGGTAAATGCTTGCCAGGGCATCTTACGTCTACGTGGTAGACCTGCTATTGCCTATGACCAACAAGGCCTGGTCTTTGCTGTAGCAATGGAAGGGGGAGCTATTAAATTGTTTGATTCTCGTTCTTATGACAAGGGTCCCTTTGACACCTTTCTAGTTGGTGGTGACACAGCCGAAGTTTGTGATATCAAATTCAGTAATGACGGAAAATCAATGCTTCTGACTACTACTAATAACAATATTTATGTTCTTGATGCATATGGAGGAGACAAGCGTTGTGGATTTAGTTTGGAACCATCTCCTGGTACCCCAATAGAGGCTACATTTACCCAAGATGGGAAGTACTTGGTGGCAGGATCTGGAAGCGGAACCATGCAAGCTTGGAGTATTGAGATGAAAAATGAGTTACCATCGACTGGGGATTCCAATTCCAGCTACCACCATTTGGTGGCATGTTGGACCAGCCATATTGGTGTTCCTTCGTGCTTGAAGTGGGCCCCTCACAAGGCCATGTTCGCTGCAGCTTCAAGTGTTCTCACGTTTTGGATACCCAATAATGATTCAAAGCTAAATAATGGTGGCACAGATGCTGAAGCTGGACCTTAACCCCAACATTGAATTAAATATGCTCTTCCTGTCCCAGCCCAGCCACAACTTTGTTTTTGTTGTTGTATCAAGAATTTAACTAACGCACTTCAGAAAAAAAAAATTGACTAACTTGGGAATTTGGTAAGCTACATAGTTTTGATACATTTCTTGAAAATTTTGATGATGCTCCAGGATGTTTGTCAATTCAATTCAATTGTAAATCCCATCACCGAATGCAATTTATGTTGAAGTTTTAG >Glyma16g07810.3 sequence type=transcript gene model=Glyma16g07810 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high TTATGTGAGTACCTTACAAATTCCAAGTATCAAATATTTATCTTAAAAATAAATAATTGTGAGTTAACCGAATATCCCAACCTATCCCACTACTTAAGTGAAAACAACAGTGAAAAAGCATCGGCGGATTTTTCTGCTCTCTTACTTTCTTTCCACTCTGCTGCTACTTTGCTCCGCCAGCATGACGACGGCGTCGTTTACGGAGCTTGACGACGATTTGGTTCGAAGCATGTCCATAGGAGCCGTCTTCTCCGACTTCGGTGGGATGATACATTCGATTGATTTCCATCGAAAGGATGATTTACTTGTCACGTCTAGTGGGGATGACTCGGTGCGACTTTACGACATTGCTAATGCTAAGTTATTGAAGACCACTTCTAATAAGAAACATGGTACTGATCGTATATGTTTTACTCATCATCCAAGCTCTGTTATATGCTCTTCAAAGTACAATTTGGAGTCTACTGGAGAATCATTGCAGTATTTATCAATGTATGATAATCGCTGCCTACGATACTTCAAAGGGCATAAACAGAGAGTTGTTTCTCTCTGCATGTCTCCAATCAATGATAGCTTCATGTCTGGTTCTCTAGACCACAGTGTTAGGATATGGGATCTTCGGGTAAATGCTTGCCAGGGCATCTTACGTCTACGTGGTAGACCTGCTATTGCCTATGACCAACAAGGCCTGGTCTTTGCTGTAGCAATGGAAGGGGGAGCTATTAAATTGTTTGATTCTCGTTCTTATGACAAGGGTCCCTTTGACACCTTTCTAGTTGGTGGTGACACAGCCGAAGTTTGTGATATCAAATTCAGTAATGACGGAAAATCAATGCTTCTGACTACTACTAATAACAATATTTATGTTCTTGATGCATATGGAGGAGACAAGCGTTGTGGATTTAGTTTGGAACCATCTCCTGGTACCCCAATAGAGGCTACATTTACCCAAGATGGGAAGTACTTGGTGGCAGGATCTGGAAGCGGAACCATGCAAGCTTGGAGTATTGAGATGAAAAATGAGTTACCATCGACTGGGGATTCCAATTCCAGCTACCACCATTTGGTAATCAATTTATTGTTGAGCTGTCTTACTTTTATGGATTTAACTCCTAATTTCAAAAGATAAAATATGGACTTATAACTTGATTTAAAGATTAATGAATTAGATTTTAGTAGATTCATATTTAATATAAATGTGCATGTGTTTTATCAGAATCTGAAGCTTTGACTTAATCCTTGGTTTCAACTCCACACATTATCTTTGGATTTTAAAATAGCCAAAATCTCAATATTATTGACTTAATTCCTGTAAAATGTTTGCTATTGACAATGTGTTCATACTGTACTGTCCTTTCTGTTCTGAGTGTACTGTTGCTTGCTTATGTATTATACTTCTGATTTTATGCCCCTAATCCTTATACACTCCCTCTAATCAGTTAACTAATTCATAAGAATTAAGGATAACATTAAATATGTCCAATATTTATATTATTTTTTTCAAAATTACCCTTAACATTAATGAAACGCATAAAAACATTAATGGATATTGTTCTAATTTTTTGTTGATACAATCTTTCACTGCCATGATTTTAATTAAGGGTATTTATGTAAAAAATAGTTAATGCTAAATATATTTTAGAATGTTTCTTATAAAAAGGAACAAAACTTTGGTCTTAAAAGAGGATACGGAGGGAGCATAAATAATGTCATGAGCATAAAGACATGAATGAAACGTTGAAACAGTAGCATGATGTCAGCTGAAAAAGGTTTTATATATTTATTTACTGATATATTTCAGGCTTAAAGAGGGTCTCGTTTTTAGTTTTAATGTTATATAAAAAAAATCGTTTTAATCTCTGCATTTCAACAAAAA
>Glyma16g07810.1 sequence type=CDS gene model=Glyma16g07810 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGACGACGGCGTCGTTTACGGAGCTTGACGACGATTTGGTTCGAAGCATGTCCATAGGAGCCGTCTTCTCCGACTTCGGTGGGATGATACATTCGATTGATTTCCATCGAAAGGATGATTTACTTGTCACGTCTAGTGGGGATGACTCGGTGCGACTTTACGACATTGCTAATGCTAAGTTATTGAAGACCACTTCTAATAAGAAACATGGTACTGATCGTATATGTTTTACTCATCATCCAAGCTCTGTTATATGCTCTTCAAAGTACAATTTGGAGTCTACTGGAGAATCATTGCAGTATTTATCAATGTATGATAATCGCTGCCTACGATACTTCAAAGGGCATAAACAGAGAGTTGTTTCTCTCTGCATGTCTCCAATCAATGATAGCTTCATGTCTGGTTCTCTAGACCACAGTGTTAGGATATGGGATCTTCGGGTAAATGCTTGCCAGGGCATCTTACGTCTACGTGGTAGACCTGCTATTGCCTATGACCAACAAGGCCTGGTCTTTGCTGTAGCAATGGAAGGGGGAGCTATTAAATTGTTTGATTCTCGTTCTTATGACAAGGGTCCCTTTGACACCTTTCTAGTTGGTGGTGACACAGCCGAAGTTTGTGATATCAAATTCAGTAATGACGGAAAATCAATGCTTCTGACTACTACTAATAACAATATTTATGTTCTTGATGCATATGGAGGAGACAAGCGTTGTGGATTTAGTTTGGAACCATCTCCTGGTACCCCAATAGAGGCTACATTTACCCAAGATGGGAAGTACTTGGTGGCAGGATCTGGAAGCGGAACCATGCAAGCTTGGAGTATTGAGATGAAAAATGAGGTGGCATGTTGGACCAGCCATATTGGTGTTCCTTCGTGCTTGAAGTGGGCCCCTCACAAGGCCATGTTCGCTGCAGCTTCAAGTGTTCTCACGTTTTGGATACCCAATAATGATTCAAAGCTAAATAATGGTGGCACAGATGCTGAAGCTGGACCTTAA >Glyma16g07810.2 sequence type=CDS gene model=Glyma16g07810 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGACGACGGCGTCGTTTACGGAGCTTGACGACGATTTGGTTCGAAGCATGTCCATAGGAGCCGTCTTCTCCGACTTCGGTGGGATGATACATTCGATTGATTTCCATCGAAAGGATGATTTACTTGTCACGTCTAGTGGGGATGACTCGGTGCGACTTTACGACATTGCTAATGCTAAGTTATTGAAGACCACTTCTAATAAGAAACATGGTACTGATCGTATATGTTTTACTCATCATCCAAGCTCTGTTATATGCTCTTCAAAGTACAATTTGGAGTCTACTGGAGAATCATTGCAGTATTTATCAATGTATGATAATCGCTGCCTACGATACTTCAAAGGGCATAAACAGAGAGTTGTTTCTCTCTGCATGTCTCCAATCAATGATAGCTTCATGTCTGGTTCTCTAGACCACAGTGTTAGGATATGGGATCTTCGGGTAAATGCTTGCCAGGGCATCTTACGTCTACGTGGTAGACCTGCTATTGCCTATGACCAACAAGGCCTGGTCTTTGCTGTAGCAATGGAAGGGGGAGCTATTAAATTGTTTGATTCTCGTTCTTATGACAAGGGTCCCTTTGACACCTTTCTAGTTGGTGGTGACACAGCCGAAGTTTGTGATATCAAATTCAGTAATGACGGAAAATCAATGCTTCTGACTACTACTAATAACAATATTTATGTTCTTGATGCATATGGAGGAGACAAGCGTTGTGGATTTAGTTTGGAACCATCTCCTGGTACCCCAATAGAGGCTACATTTACCCAAGATGGGAAGTACTTGGTGGCAGGATCTGGAAGCGGAACCATGCAAGCTTGGAGTATTGAGATGAAAAATGAGTTACCATCGACTGGGGATTCCAATTCCAGCTACCACCATTTGGTGGCATGTTGGACCAGCCATATTGGTGTTCCTTCGTGCTTGAAGTGGGCCCCTCACAAGGCCATGTTCGCTGCAGCTTCAAGTGTTCTCACGTTTTGGATACCCAATAATGATTCAAAGCTAAATAATGGTGGCACAGATGCTGAAGCTGGACCTTAA >Glyma16g07810.3 sequence type=CDS gene model=Glyma16g07810 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGACGACGGCGTCGTTTACGGAGCTTGACGACGATTTGGTTCGAAGCATGTCCATAGGAGCCGTCTTCTCCGACTTCGGTGGGATGATACATTCGATTGATTTCCATCGAAAGGATGATTTACTTGTCACGTCTAGTGGGGATGACTCGGTGCGACTTTACGACATTGCTAATGCTAAGTTATTGAAGACCACTTCTAATAAGAAACATGGTACTGATCGTATATGTTTTACTCATCATCCAAGCTCTGTTATATGCTCTTCAAAGTACAATTTGGAGTCTACTGGAGAATCATTGCAGTATTTATCAATGTATGATAATCGCTGCCTACGATACTTCAAAGGGCATAAACAGAGAGTTGTTTCTCTCTGCATGTCTCCAATCAATGATAGCTTCATGTCTGGTTCTCTAGACCACAGTGTTAGGATATGGGATCTTCGGGTAAATGCTTGCCAGGGCATCTTACGTCTACGTGGTAGACCTGCTATTGCCTATGACCAACAAGGCCTGGTCTTTGCTGTAGCAATGGAAGGGGGAGCTATTAAATTGTTTGATTCTCGTTCTTATGACAAGGGTCCCTTTGACACCTTTCTAGTTGGTGGTGACACAGCCGAAGTTTGTGATATCAAATTCAGTAATGACGGAAAATCAATGCTTCTGACTACTACTAATAACAATATTTATGTTCTTGATGCATATGGAGGAGACAAGCGTTGTGGATTTAGTTTGGAACCATCTCCTGGTACCCCAATAGAGGCTACATTTACCCAAGATGGGAAGTACTTGGTGGCAGGATCTGGAAGCGGAACCATGCAAGCTTGGAGTATTGAGATGAAAAATGAGTTACCATCGACTGGGGATTCCAATTCCAGCTACCACCATTTGGTAATCAATTTATTGTTGAGCTGTCTTACTTTTATGGATTTAACTCCTAATTTCAAAAGATAA
>Glyma16g07810.1 sequence type=predicted peptide gene model=Glyma16g07810 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MTTASFTELDDDLVRSMSIGAVFSDFGGMIHSIDFHRKDDLLVTSSGDDSVRLYDIANAKLLKTTSNKKHGTDRICFTHHPSSVICSSKYNLESTGESLQYLSMYDNRCLRYFKGHKQRVVSLCMSPINDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPAIAYDQQGLVFAVAMEGGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGDKRCGFSLEPSPGTPIEATFTQDGKYLVAGSGSGTMQAWSIEMKNEVACWTSHIGVPSCLKWAPHKAMFAAASSVLTFWIPNNDSKLNNGGTDAEAGP* >Glyma16g07810.2 sequence type=predicted peptide gene model=Glyma16g07810 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MTTASFTELDDDLVRSMSIGAVFSDFGGMIHSIDFHRKDDLLVTSSGDDSVRLYDIANAKLLKTTSNKKHGTDRICFTHHPSSVICSSKYNLESTGESLQYLSMYDNRCLRYFKGHKQRVVSLCMSPINDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPAIAYDQQGLVFAVAMEGGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGDKRCGFSLEPSPGTPIEATFTQDGKYLVAGSGSGTMQAWSIEMKNELPSTGDSNSSYHHLVACWTSHIGVPSCLKWAPHKAMFAAASSVLTFWIPNNDSKLNNGGTDAEAGP* >Glyma16g07810.3 sequence type=predicted peptide gene model=Glyma16g07810 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MTTASFTELDDDLVRSMSIGAVFSDFGGMIHSIDFHRKDDLLVTSSGDDSVRLYDIANAKLLKTTSNKKHGTDRICFTHHPSSVICSSKYNLESTGESLQYLSMYDNRCLRYFKGHKQRVVSLCMSPINDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPAIAYDQQGLVFAVAMEGGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGDKRCGFSLEPSPGTPIEATFTQDGKYLVAGSGSGTMQAWSIEMKNELPSTGDSNSSYHHLVINLLLSCLTFMDLTPNFKR*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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