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Report for Sequence Feature Glyma16g07410

Feature Type:gene_model
Chromosome:Gm16
Start:6656888
stop:6659675
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma16g07410
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G40570AT Annotation by Michelle Graham. TAIR10: Surfeit locus protein 2 (SURF2) | chr5:16246798-16248251 FORWARD LENGTH=204 SoyBaseE_val: 8.00E-58ISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
PTHR16422Panther FAMILY NOT NAMED JGI ISS
PTHR16422:SF3Panther SUBFAMILY NOT NAMED JGI ISS
PF05477PFAM Surfeit locus protein 2 (SURF2) JGI ISS
UniRef100_I1MLS5UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MLS5_SOYBN SoyBaseE_val: 0ISS
UniRef100_Q9FM40UniRef Annotation by Michelle Graham. Most informative UniRef hit: Emb|CAB87783.1 n=1 Tax=Arabidopsis thaliana RepID=Q9FM40_ARATH SoyBaseE_val: 4.00E-55ISS

Expression Patterns of Glyma16g07410
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma16g07410 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.16g068500 Wm82.a2.v1IGC As supplied by JGI

References for Glyma16g07410
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma16g07410
>Glyma16g07410.1   sequence type=CDS   gene model=Glyma16g07410   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTGAACAAGAGGATGGCTACGACGGGGAAGAAGGAAGGGAACAACTTGCTAGGGTTGCCGAATTTCACAGAATTAGGAAACGGGCGTTTCAAGTGCTTAGAAACAGGGCACGAGGTCCTCTCGAAGGACATAGCGTCCTACTCGCACAGCAAAAAATGCCGTTTGGGTCTCATCGATTTCGCCTTGTCCAATAACAAACCCCCTCTCAACATGTTCAAACAACACCCTCTCTGCCGTTCAAAGTTGATATGTAAGCTGACTGGAGACAATGTCAATAAGTCAGAGGAACATATCTGGAAGCATATGAGTGGGAAAAGGTTTCTCAATAAATTAGAGCAAGAGGAAGAAGAAAAGTTGTTGTGTCATGGATTGGAAGGTGAAGAGAGCTTACATGAGTCAAAAAGTGCAGATGGTGGAAAAAAGGATAGAATGAAGAAGAAGAAGAAGAAAAAGAATAGGGTCAAGGAAATTGATGAGGAGAAATTGCAGGTGTCAAAAAGTGCAGATGGTGCAAAAAAAGATAGAATGAAGAAGGAAAATAATAAGGACAAGGGAATTGAGGAGGTTATATCTGAAGTTAGGAAGTCTTCCAATGAGAACAGTGACACTGAAGACGAAGACTTCTGGATGCCTCCTGCTGGTGATCGTTGGGACAATGATGATGGTGGCGATAGATGGGGTTCAGAGTCAGAGCAGGGAACTGAAGAGGGAGATGTAATTGATGGTGATGCTGCTGAGGATTGCAAGGAGTCAGACGAGTTGTCATCAAGGACGAAAAGAATGTCGATAGAAATTGGACCAAGCAGCTTTGCTACAAGAAAAAAGAAAAGTAAGAAGAACCACCAAACTTAG
Predicted protein sequences of Glyma16g07410
>Glyma16g07410.1   sequence type=predicted peptide   gene model=Glyma16g07410   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVNKRMATTGKKEGNNLLGLPNFTELGNGRFKCLETGHEVLSKDIASYSHSKKCRLGLIDFALSNNKPPLNMFKQHPLCRSKLICKLTGDNVNKSEEHIWKHMSGKRFLNKLEQEEEEKLLCHGLEGEESLHESKSADGGKKDRMKKKKKKKNRVKEIDEEKLQVSKSADGAKKDRMKKENNKDKGIEEVISEVRKSSNENSDTEDEDFWMPPAGDRWDNDDGGDRWGSESEQGTEEGDVIDGDAAEDCKESDELSSRTKRMSIEIGPSSFATRKKKSKKNHQT*






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