SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G25940 | AT | Annotation by Michelle Graham. TAIR10: alpha-vacuolar processing enzyme | chr2:11063496-11066020 REVERSE LENGTH=478 | SoyBase | E_val: 1.00E-165 | ISS |
| GO:0006508 | GO-bp | Annotation by Michelle Graham. GO Biological Process: proteolysis | SoyBase | N/A | ISS |
| GO:0006624 | GO-bp | Annotation by Michelle Graham. GO Biological Process: vacuolar protein processing | SoyBase | N/A | ISS |
| GO:0005576 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: extracellular region | SoyBase | N/A | ISS |
| GO:0004197 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: cysteine-type endopeptidase activity | SoyBase | N/A | ISS |
| KOG1348 | KOG | Asparaginyl peptidases | JGI | ISS | |
| PTHR12000 | Panther | HEMOGLOBINASE FAMILY MEMBER | JGI | ISS | |
| PTHR12000:SF2 | Panther | HEMOGLOBINASE | JGI | ISS | |
| PF01650 | PFAM | Peptidase C13 family | JGI | ISS | |
| UniRef100_G7L5C2 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Vacuolar processing enzyme-1b n=1 Tax=Medicago truncatula RepID=G7L5C2_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI000233AC17 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233AC17 related cluster n=1 Tax=unknown RepID=UPI000233AC17 | SoyBase | E_val: 0 | ISS |
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Glyma16g07190 not represented in the dataset |
Glyma16g07190 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.16g066600 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma16g07190.2 sequence type=CDS gene model=Glyma16g07190 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAAGTTCAACAGTAGAAATTGGGTTACACTAATAGCCTCAGTGTGGATGAGCTTCACAGTGAGTGTAATGGAAGGTGTGCGTCCTTTACCTAATCCATTAATAGAGGCACATGGGCACGTTAAGCATGCAACGGCAAAAAGATGGGCCGTTCTTGTTGCTGGTTCAAAGGGTTATGATAATTATAGGCACCAAGCAGATGTTTGCCATGCCTACCAAGTACTAAAGAAGGGTGGTCTTAAAGATGAAAACATCATTGTTTTCATGTATGATGACATTGCCAACCATACTCTAAACCCTAGGCTTGGCACTGTAATCAATAAACCAAATGGTCCAGATGTTTATAAAGGAGTTCCCAAGGATTATACTGGAAATGCCACCACTTCAGAAAACTTTTATGCTGTAATTAGTGGTAACCGAAGTGCTCTCTCTGGAGGTAGTGGCAAGGTTGTGGACAGTGGTCCGAATGACACCATTTTCATTTATTATGCGGACCATGGTGCTACCGGTGTCATTGGCATGCCAGTTGGGGATTTTGTGATGGCCAACGATTTCGTAGATGTGTTGAAGAAGAAACATGCAGCTAAATCTTACAAAAAGATGGTGATATACATGGAAGCATGTGAATCTGGGAGCATGTTTGAAGGTATTCTTCCGAATAACATAGACGTATATGCGACCACCGCTGCCAACACAGATGAGGATAGTTATGGTTTTTATTGTCCTGATCTCTACCCTACTCCACCGCCTGAGTACACTACTTGTTTGGGAGATGAGTACAGCATTTCGTGGTTAGAAGACAGTGACAAAAATGATATGGTAAATGAAACTCTGCAACAACAGTATGAAACAGTTCGTCGAAGAACGTTAGTTAGTCATATTAATGCCACTTCCCATGTGATGCAATATGGAGATAAAGAGTTGAACAATGATTCTCTAGCTATCTACATTGGTGCACTAGCCCCCAGTCTAAGTCTTAATGAAAATGCACATTCCTTTGAACAATCTACTACTCAAACTAAACTTATTAGCCAACGAGATACCCGTTTACTCCATCTCAGGCTCGAGTTGCAAAAGGCTCAAGATGGTTCTGAGAAGTTGAAAGCTCAGAAAGAGTTAGCTGATGAAATTGCACATAGGAAACATGTAGATAATGTTGTCCATCTCATAGGGGATCTCTTGTTTGGAGAAGAGAATAGCTCTGCTATGATGTTCCATGTTCGTCCAGCTGGCAAGCCTCTTGTTGATGATTGGGATTGTTTTAAGACCCTTGTAAAAACATATGAGAGCCAGTGCGGTACCTTATCAAGCTATGGAAGAAAATACACAAGAGCCTTTGCTAACATGTGCAATGCTGGCATTTATGAGGAGCAACTGAAAACAACGACATCGCAAGCTTGTCCCCAGAAAAATCATGCTTCTTAA
>Glyma16g07190.2 sequence type=predicted peptide gene model=Glyma16g07190 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MKFNSRNWVTLIASVWMSFTVSVMEGVRPLPNPLIEAHGHVKHATAKRWAVLVAGSKGYDNYRHQADVCHAYQVLKKGGLKDENIIVFMYDDIANHTLNPRLGTVINKPNGPDVYKGVPKDYTGNATTSENFYAVISGNRSALSGGSGKVVDSGPNDTIFIYYADHGATGVIGMPVGDFVMANDFVDVLKKKHAAKSYKKMVIYMEACESGSMFEGILPNNIDVYATTAANTDEDSYGFYCPDLYPTPPPEYTTCLGDEYSISWLEDSDKNDMVNETLQQQYETVRRRTLVSHINATSHVMQYGDKELNNDSLAIYIGALAPSLSLNENAHSFEQSTTQTKLISQRDTRLLHLRLELQKAQDGSEKLKAQKELADEIAHRKHVDNVVHLIGDLLFGEENSSAMMFHVRPAGKPLVDDWDCFKTLVKTYESQCGTLSSYGRKYTRAFANMCNAGIYEEQLKTTTSQACPQKNHAS*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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