Glyma16g07140 - SoyBase

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Report for Sequence Feature Glyma16g07140

Feature Type:	gene_model
Chromosome:	Gm16
Start:	6423306
stop:	6427717
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma16g07140

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G40660	AT	Annotation by Michelle Graham. TAIR10: ATP12 protein-related \| chr5:16283650-16285161 REVERSE LENGTH=325	SoyBase	E_val: 1.00E-149	ISS
GO:0043461	GO-bp	Annotation by Michelle Graham. GO Biological Process: proton-transporting ATP synthase complex assembly	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
KOG3015	KOG	F1-ATP synthase assembly protein	JGI		ISS
PTHR21013	Panther	ATP SYNTHASE MITOCHONDRIAL F1 COMPLEX ASSEMBLY FACTOR 2/ATP12 PROTEIN, MITOCHONDRIAL PRECURSOR	JGI		ISS
PF07542	PFAM	ATP12 chaperone protein	JGI		ISS
UniRef100_B9SLS3	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: ATP synthase mitochondrial F1 complex assembly factor 2, mitochondrial, putative n=1 Tax=Ricinus communis RepID=B9SLS3_RICCO	SoyBase	E_val: 4.00E-154	ISS
UniRef100_I1MLQ7	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MLQ7_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma16g07140

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma16g07140

Paralog	Evidence	Comments
Glyma19g23591	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma16g07140 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.16g066000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma16g07140

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma16g07140

Limit To All Plant Sequences

>Glyma16g07140.1   sequence type=CDS   gene model=Glyma16g07140   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTCACTCGTTGATAAGAAAATGCATAAAACCTGCAACCCTCAACTTCCTGACACCACTCGCAGTCCCTGAGATTCGGCGGCGGCTAGCGTCGGTGGCGGCAGCGGCGGACGAGGACCCTCCGCAATCGCCGTCGTCGTTCACTTTCTCGTCGGAGGGGGAGAAGGTGTACGTGAAGCCGCCGGCGGGGAAGTGGAAGCCGTCGCCGTCGTCGACGGTGACGATGCCGATGTCGTTCATGACGGGGTCCATCGTGGGGAAGCGCTTCTACAAGGAGGTGAAGACTCGCGAAGCCGATGACGGGAACGGCTGGACGGTTATGCTCGATTACCGAACCCTAAAGACTCCTTCCAAGAGACCCCTCAAGCTTCCCTCTCTTCCTCTTGCTAAAGCCATTGCTGCTGAATGGGAATACCAGCAAACGGATGGCATAAGGCCCTTCACAATGCCTCTTATGAGACTTGCTTGCACTGCCTTGGAAAGAGTTCCACTCACAAGGAGCAAAGTTATTGAGAATTTGATGAAGAAATTTAATCAAGATTTAGTATTTTGCCGTGCACCTGATGACGATGAGCTGACAAGCTATGTACATGCTCGTCAGGTGGAGAAAATTGATCCATTGCTTCGTTGGGTGGAGTCAGAATTTGGCTTTAAGCCAGTTCTTTACACCAGCTTTTTTGGTGGAAAGCAGGAAGATGGTCTTGTAATGGCTATTGAGAACCTTCTAAAGAAAACAGATGATTGCGAATTGGCAGCAATTGATGCTATTGCAGCATCAGCACATTCGTTAATTATAGCTATTGGAATGGTTCAGGGGAAATTGCAAATTGAGGAAGCAATTGAACTTATTAGACTTGAAGAAGATTCTCAGGTGGACAGGTGGGGCCTCGTAGAAGGTGGCCATGATGTGGATATTGCTGATCTAAGGGTGCAGGTTTCGTCAGCAATTGTATTTCTTGGTTTATCAAGATGCATATAG

Predicted protein sequences of Glyma16g07140

Limit To All Plant Sequences

>Glyma16g07140.1   sequence type=predicted peptide   gene model=Glyma16g07140   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAHSLIRKCIKPATLNFLTPLAVPEIRRRLASVAAAADEDPPQSPSSFTFSSEGEKVYVKPPAGKWKPSPSSTVTMPMSFMTGSIVGKRFYKEVKTREADDGNGWTVMLDYRTLKTPSKRPLKLPSLPLAKAIAAEWEYQQTDGIRPFTMPLMRLACTALERVPLTRSKVIENLMKKFNQDLVFCRAPDDDELTSYVHARQVEKIDPLLRWVESEFGFKPVLYTSFFGGKQEDGLVMAIENLLKKTDDCELAAIDAIAASAHSLIIAIGMVQGKLQIEEAIELIRLEEDSQVDRWGLVEGGHDVDIADLRVQVSSAIVFLGLSRCI*

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