Glyma16g06810 - SoyBase

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Report for Sequence Feature Glyma16g06810

Feature Type:	gene_model
Chromosome:	Gm16
Start:	6139627
stop:	6146493
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma16g06810

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G60170	AT	Annotation by Michelle Graham. TAIR10: pre-mRNA processing ribonucleoprotein binding region-containing protein \| chr1:22193008-22195177 FORWARD LENGTH=485	SoyBase	E_val: 0	ISS
GO:0009793	GO-bp	Annotation by Michelle Graham. GO Biological Process: embryo development ending in seed dormancy	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
KOG2574	KOG	mRNA splicing factor PRP31	JGI		ISS
PTHR13904	Panther	PRE-MRNA SPLICING FACTOR PRP31	JGI		ISS
PF01798	PFAM	Putative snoRNA binding domain	JGI		ISS
PF08060	PFAM	NOSIC (NUC001) domain	JGI		ISS
PF09785	PFAM	Prp31 C terminal domain	JGI		ISS
UniRef100_A2Q2G1	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Pre-mRNA processing ribonucleoprotein, binding region; NOSIC n=1 Tax=Medicago truncatula RepID=A2Q2G1_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_UPI000233ABE6	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233ABE6 related cluster n=1 Tax=unknown RepID=UPI000233ABE6	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma16g06810

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma16g06810

Paralog	Evidence	Comments
Glyma19g24310	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma16g06810 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.16g063000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma16g06810

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma16g06810

Limit To All Plant Sequences

>Glyma16g06810.1   sequence type=CDS   gene model=Glyma16g06810   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTACGCTTGCCGATTCTTTTCTCGCCGACCTTGATGAACTATCTGATAACGAGGCTGAAATTCCCGAGGATAACGATGTGGATGCCGCAGACATGGAAGAGGATGTCGATGGCGACCTTGCCGACCTAGAAAACCTCAACTATGATGACTTGGACAGTGTTTCCAAGTTGCAGAAAACCCAGAGGTACACTGATATTATCCAGAAAGTGGAAGAGGCACTTCATAAAAAGGAGTCTGAGGTCTTGTTTCAGGTGGTGGATATAGAAGATGATCCTGAATACCAGCTGATAGTGGATTGCAATGCACTGTCAGTTGACATAGAAAATGAAATTGTTATTATTCACAACTTTATTCGGGACAAGTATCGTTTGAAATTTCCGGAGCTTGAGTCGCTGGTGCATCACCCGATTGATTATGCGCGTGTTGTTAAGAAGATAGGAAATGAAATGGATCTCACTCTTGTGGATTTAGAAGGGCTTTTACCCTCGGCTATTATTATGGTTGTCTCTGTTACAGCATCAACTACAACTGGCAAGCCTCTTCCAGAAGAAGTGCTTAGCAAGACAGTTGAGGCCTGCGATCGAGCTCTTGATCTTGACTCAGCAAAGAAGAAAGTTCTTGATTTCGTTGAGAGTAGGATGGGCTACATTGCACCCAATCTTTCTGCTATAGTTGGGAGTGCTGTTGCAGCCAAACTCATGGGGACAGCTGGTGGTCTAGCATCTCTTGCAAAGATGCCTGCTTGTAATGTTCAGCTTCTTGGTGCCAAGAAAAAGAATCTTGCTGGGTTCTCCACAGCAACATCTCAATTTCGTGTAGGTTACCTTGAGCAAACAGAAATATTTCAGACTACTCCTCCTTCTCTAAGGATGCGAGCATGCCGACTCCTGGCTGCAAAGTCTACACTTGCAGCACGAGTAGATTCTATACGCGGGGATCCATCTGGAAAAACTGGAAGGGCTTTCAAGGACGAGATCCACAAAAAAATTGAGAAGTGGCAGGAGCCCCCCCCTGCTAAGCAACCAAAACCACTTCCAGTTCCTGATTCTGAGCCTAAAAAGAAGAGAGGTGGTCGTCGTCTTAGGAAGATGAAGGAAAGGTATGCAATAACAGACATGAGGAAGTTAGCCAATAGGATGCAATTTGGAGTCCCAGAAGAGAGTTCATTAGGAGATGGTCTGGGTGAGGGCTATGGAATGCTTGGTCAGGCTGGCAGTGGCAAGCTTCGTGTGTCTGTTGGTCAAAGCAAACTTGCAGCAAAAGTTGCTAAAAAATTTAAGGAAAAGAATTATGGTAGTAGTGGTGCTACCTCTGGTTTGACATCAAGTCTTGCATTCACACCAGTGCAGGGTATTGAGCTGACAAATCCACAGGCTCATGCACACCAACTTGGTAGTGGAACTCAAAGCACTTATTTCTCTGAAACAGGAACATTTTCAAAGATCAAGAGGACATGA

Predicted protein sequences of Glyma16g06810

Limit To All Plant Sequences

>Glyma16g06810.1   sequence type=predicted peptide   gene model=Glyma16g06810   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MATLADSFLADLDELSDNEAEIPEDNDVDAADMEEDVDGDLADLENLNYDDLDSVSKLQKTQRYTDIIQKVEEALHKKESEVLFQVVDIEDDPEYQLIVDCNALSVDIENEIVIIHNFIRDKYRLKFPELESLVHHPIDYARVVKKIGNEMDLTLVDLEGLLPSAIIMVVSVTASTTTGKPLPEEVLSKTVEACDRALDLDSAKKKVLDFVESRMGYIAPNLSAIVGSAVAAKLMGTAGGLASLAKMPACNVQLLGAKKKNLAGFSTATSQFRVGYLEQTEIFQTTPPSLRMRACRLLAAKSTLAARVDSIRGDPSGKTGRAFKDEIHKKIEKWQEPPPAKQPKPLPVPDSEPKKKRGGRRLRKMKERYAITDMRKLANRMQFGVPEESSLGDGLGEGYGMLGQAGSGKLRVSVGQSKLAAKVAKKFKEKNYGSSGATSGLTSSLAFTPVQGIELTNPQAHAHQLGSGTQSTYFSETGTFSKIKRT*

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