Glyma16g06770 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma16g06770

Feature Type:	gene_model
Chromosome:	Gm16
Start:	6096492
stop:	6100341
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma16g06770

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G01750	AT	Annotation by Michelle Graham. TAIR10: Ankyrin repeat family protein \| chr3:270615-272691 FORWARD LENGTH=664	SoyBase	E_val: 0	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
KOG4412	KOG	26S proteasome regulatory complex, subunit PSMD10	JGI		ISS
PTHR24158	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR24158:SF306	Panther		JGI		ISS
PF00023	PFAM	Ankyrin repeat	JGI		ISS
UniRef100_B9RBN5	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Ankyrin repeat-containing protein, putative n=1 Tax=Ricinus communis RepID=B9RBN5_RICCO	SoyBase	E_val: 0	ISS
UniRef100_UPI000233AAA8	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233AAA8 related cluster n=1 Tax=unknown RepID=UPI000233AAA8	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma16g06770

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma16g06770

Paralog	Evidence	Comments
Glyma19g24420	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma16g06770 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.16g062700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma16g06770

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma16g06770

Limit To All Plant Sequences

>Glyma16g06770.1   sequence type=CDS   gene model=Glyma16g06770   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCCAACTACATATTTCCCACTAAGGTGGGAGAGCACTGGGGACCAATGGTGGTATGCATCACCAATAGATTGTGCTGCTGCAAATGGCCACTATGACTTGGTTCGTGAGCTGCTAAGAATTGACAACAACCACCTCTTCAAGCTCACTTCCCTTCGCCGAATTCGCCGCCTTGAAGTCGTGTGGGATGATGAAGAACAACAACAGTTCAGTGATGTTGCAAAGTGCCGCTCACAGGTGGCACATAAGCTGCTTCTTGAGTGTGATTCCAAGAGAAGAAGCAGCAGCAAGAACTCTCTCATCCGTGCAGGGTATGGAGGGTGGCTAATCTACACTGCTGCATCAGCTGGTGACTTGAGTTTTGTGCAGCAACTTCTTGAGAGGAACCCTTTGTTGGTGTTTGGAGAAGGAGAGTATAATGTCACTGATATCTTTTATGCTGCTTCAAGGGGCAAGAGTTGTGAGGTTTTTAGGCTGGTTTTTGATTTTGCAGTTTCTCCAAGGTTTGTCACTGGCAAAGGCGGGGTTTTGGAGGAGCATGTTGGTGGGGATGTTCCTCCTGTTTACAAGTGGGAGATGAGTAATAGGGCTGTTCATGCTGCTGCTAGAGGCGGTAGTGTGGAGATTTTGGTGGAGTTTCTTGCTAATTGCTCTGATGTTTTGGCTTATAGAGATGCTCAGGGATCTACTCTCTTGCATTCTGCTTCAGGGAGAGGGCAGGTTGAGGTGGTCAAATACCTCACATCATCCTTTGACATTATAAACTCCACAGATCATCAGGGAAACACTGCTTTGCATGTGGCTGCTTACAGGGGCCAATTAGCTGCAGTTGAGGCTTTAGTTTCTGCATCTCCTGCATTGATCTCTCTGAGAAACAATGCGGGAGAAACGTTCCTCCATAAGGCCGTGTCCGGTTTTCAGTCCACCTCATTCAGAAGATTGGACAGACAGGTTGAGCTTCTGAGGCAGTTAGTGAGTGGTAAAAAATTTCACATAGAGGAAGTCATCAATGTAAAGAACACTGATGGAAGAACTGCACTCCACATTGCCACAATAGGGAAAATTCACACTGATCTTGTTAAGCTCCTGATGACTGCTCCATCAATAAATGTGAATGTGAGTGATGCTAATGGCATGACCCCACTTGATTACCTTAAGCAAAGTCCCAATTCAGCAGCATCAAATGTGCTAATTAGAAAATTGATTGCTGCGGGTGGAATGTTCCATCATCATAGTTCAAGAAAGGCCATAGCCTCACACATGAAAATGCATAGTATTGGAGGCAGTCCTGGAACATCATTCAGAATCTCAGACACTCAGATATTTTTGTACACGGGAATTGAGAATGCATCAGATGCTAGCACTGATCAGGGAAGTGCAGGAATGAGTTCTACTTCATCAGAACACACTGCATATGACTCAGCAGCAGAGAACAGACCCCCAACAACAAGCAAAAGGCCTTCGGTCGCTGCCGGGTTGAAACGAGTCCTTCAGTGGCCATTGGTGAAGGACAAGAAAGCTGAGGGGATAAGGAAATCAATTGATGAGGGTTCATTGGACTCATGCAGGAAATGGGACATCACAGATGAAATTCCAACCCCACTTAGACAAAAATTCTTTAGGCATTCTGCGCTTCCTAACAACAAAAGGAACCTTTCTGTGAGGAGTTACCAGTCAAGCCCAAATGCTAAGAAGAGATTTGCTTCAGGACTGGTACATGTAAAGGTTTCAAGAAGATCAAGCTCTAGTTCCTTTTCCATATCATCATTTTCATCACCTAGATCAACGGATAATAAGCAAAAGGGTTTTTGTGTTGACAATGATGTTGCTGGACCATCTTGCTCAAATCACCAAAATGATAAATCTACAAATTCAGGGAAGAGAACTTCTGTTAGCAAAAAGCTAAGGGGTCATTATTTCTGTTTCTCCAAAGCCTCAGTGAACAAGGAGCAAGAAAGTTATTGTTACAAGGATCATGATGTTTTTGTGAATGGCTTAATTGGATGA

Predicted protein sequences of Glyma16g06770

Limit To All Plant Sequences

>Glyma16g06770.1   sequence type=predicted peptide   gene model=Glyma16g06770   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MPTTYFPLRWESTGDQWWYASPIDCAAANGHYDLVRELLRIDNNHLFKLTSLRRIRRLEVVWDDEEQQQFSDVAKCRSQVAHKLLLECDSKRRSSSKNSLIRAGYGGWLIYTAASAGDLSFVQQLLERNPLLVFGEGEYNVTDIFYAASRGKSCEVFRLVFDFAVSPRFVTGKGGVLEEHVGGDVPPVYKWEMSNRAVHAAARGGSVEILVEFLANCSDVLAYRDAQGSTLLHSASGRGQVEVVKYLTSSFDIINSTDHQGNTALHVAAYRGQLAAVEALVSASPALISLRNNAGETFLHKAVSGFQSTSFRRLDRQVELLRQLVSGKKFHIEEVINVKNTDGRTALHIATIGKIHTDLVKLLMTAPSINVNVSDANGMTPLDYLKQSPNSAASNVLIRKLIAAGGMFHHHSSRKAIASHMKMHSIGGSPGTSFRISDTQIFLYTGIENASDASTDQGSAGMSSTSSEHTAYDSAAENRPPTTSKRPSVAAGLKRVLQWPLVKDKKAEGIRKSIDEGSLDSCRKWDITDEIPTPLRQKFFRHSALPNNKRNLSVRSYQSSPNAKKRFASGLVHVKVSRRSSSSSFSISSFSSPRSTDNKQKGFCVDNDVAGPSCSNHQNDKSTNSGKRTSVSKKLRGHYFCFSKASVNKEQESYCYKDHDVFVNGLIG*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain