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Report for Sequence Feature Glyma16g06640

Feature Type:gene_model
Chromosome:Gm16
Start:5951136
stop:5952363
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma16g06640
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G05950AT Annotation by Michelle Graham. TAIR10: RmlC-like cupins superfamily protein | chr3:1781130-1781964 REVERSE LENGTH=229 SoyBaseE_val: 3.00E-86ISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0005576GO-cc Annotation by Michelle Graham. GO Cellular Compartment: extracellular region SoyBaseN/AISS
GO:0048046GO-cc Annotation by Michelle Graham. GO Cellular Compartment: apoplast SoyBaseN/AISS
GO:0030145GO-mf Annotation by Michelle Graham. GO Molecular Function: manganese ion binding SoyBaseN/AISS
GO:0045735GO-mf Annotation by Michelle Graham. GO Molecular Function: nutrient reservoir activity SoyBaseN/AISS
PF00190PFAM Cupin JGI ISS
UniRef100_C7S8B8UniRef Annotation by Michelle Graham. Most informative UniRef hit: Germin-like protein 4 n=1 Tax=Glycine max RepID=C7S8B8_SOYBN SoyBaseE_val: 3.00E-155ISS
UniRef100_C7S8B8UniRef Annotation by Michelle Graham. Best UniRef hit: Germin-like protein 4 n=1 Tax=Glycine max RepID=C7S8B8_SOYBN SoyBaseE_val: 3.00E-155ISS

Expression Patterns of Glyma16g06640
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma16g06640 not represented in the dataset
Glyma16g06640 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma16g06640 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.16g061400 Wm82.a2.v1IGC As supplied by JGI

References for Glyma16g06640
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma16g06640
>Glyma16g06640.1   sequence type=CDS   gene model=Glyma16g06640   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAAGTTGTGTACTTCCTTGTTGCTATCTTGGCTTTGGCATCCTCTCTTGTCTCTGCCCATGACCCTAGTCCTCTGCAAGATTTTTGTGTGGCAACCAAAGAACGCGATGGTGTATATGTGAATGGAAAATTCTGCAAAGAGCCTAAAGATGTGAAAGCCGAAGATTTCTACAAAGAAGTGGAGCCTGGGAATCCTTCGAATCAATTGGGGTCAGCAGTGACTCCTGTGTTTGTTGATCAACTACCAGGGCTAAACACACTTGGTTTATCTTTGGCTCGCATAGATTATGAATCAATGGGTTTAAACCCTCCACACATTCACCCTCGAGCCACTGAAATCATTATAGTCCTTGAGGGAATTCTTCTTGTTGGATTTGCGACTTCCAATCAAGATGGAAATCGTCTCTTCAGCAAAATGTTGAAGAAGGGTGATGTGTTTGTGTCCCCTATGGGTCTCATTCAGTTCCAATATAATCCCGGGAGGGGCCGTGCTGTTTCCATTTCTGCTTTTAGCAGCCAAAATCCAGGAACTGTCACTGTTGCAAATGCTGTGTTTAGGTCTAATCCACGTATTTCAACCGACATTCTCACCAAATCTTTTCAAGTGGATAAGAAAGTGATTGATGAGCTTCAGAATCAAAACTAA
Predicted protein sequences of Glyma16g06640
>Glyma16g06640.1   sequence type=predicted peptide   gene model=Glyma16g06640   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKVVYFLVAILALASSLVSAHDPSPLQDFCVATKERDGVYVNGKFCKEPKDVKAEDFYKEVEPGNPSNQLGSAVTPVFVDQLPGLNTLGLSLARIDYESMGLNPPHIHPRATEIIIVLEGILLVGFATSNQDGNRLFSKMLKKGDVFVSPMGLIQFQYNPGRGRAVSISAFSSQNPGTVTVANAVFRSNPRISTDILTKSFQVDKKVIDELQNQN*






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