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SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G01780 | AT | Annotation by Michelle Graham. TAIR10: ARM repeat superfamily protein | chr3:279171-283399 FORWARD LENGTH=1176 | SoyBase | E_val: 0 | ISS |
| GO:0000910 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cytokinesis | SoyBase | N/A | ISS |
| GO:0006897 | GO-bp | Annotation by Michelle Graham. GO Biological Process: endocytosis | SoyBase | N/A | ISS |
| GO:0009555 | GO-bp | Annotation by Michelle Graham. GO Biological Process: pollen development | SoyBase | N/A | ISS |
| GO:0030244 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cellulose biosynthetic process | SoyBase | N/A | ISS |
| GO:0048193 | GO-bp | Annotation by Michelle Graham. GO Biological Process: Golgi vesicle transport | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
| GO:0005829 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytosol | SoyBase | N/A | ISS |
| GO:0005886 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane | SoyBase | N/A | ISS |
| GO:0009504 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cell plate | SoyBase | N/A | ISS |
| GO:0009506 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma | SoyBase | N/A | ISS |
| GO:0009524 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: phragmoplast | SoyBase | N/A | ISS |
| UniRef100_F4J8D3 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Protein TPLATE n=1 Tax=Arabidopsis thaliana RepID=TPLAT_ARATH | SoyBase | E_val: 0 | ISS |
| UniRef100_I1MLL7 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MLL7_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma16g06580 not represented in the dataset |
Glyma16g06580 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.16g060500 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma16g06580.1 sequence type=CDS gene model=Glyma16g06580 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGACATCCTCTTCGCCCAGATCCAAGCCGACCTCCGCTCCAACGACGCCCTCCGCCAGTCCGGCGCCCTCCTCCAGGCCCTCCAGCAGTCCGCCGCCGGTCGCGACATCGCCGTCATTGCCAAGACTGCCGTCGAGGAAATCGTCGCCGCCCCCGCCTCCGCCGTCTGCAAGAAGCTCGCCTTCGACCTCATCCGCTCCACCCGCCTCACCCCCGACCTCTGGGAGACCGTCTGCGGCGGCATCCGCACCGACCTCCACTTCCCCGACCCCGACGTCGCCGCCGCCGCCGTCTCCATCCTCGCCGCCATCCCCTCCTACCGCCTCGCCAAACTCATCTCCGACTGCAACAAGGAAATCTCCGACTGCTTCGACTCCCCCAGCGACTCCCTCCGCTTCTCCGCCACTGAAACCCTTGGCTGCGTCCTCGCCCGCGACGACCTCGTCACCCTCTGCGAAAACAACGTCAACCTCCTCGACCGCGTCTCCGCCTGGTGGGCCCGCGTGGGGTCCAACATGCTCGACCGCTCCGACGCCGTTTCCAAGGTCGCATTCGAATCCGTCGGCCGCCTCTTCCAGGAATTCAGCTCCAAACGCATGAGCAAGCTCGCCGGCGACAAACTCGTCGATTCCGAAAACTCCCTCGCGATCCGCTCCAACTGGGTCTCTTCCATGGTGGACTTCGTCTGGAGGAAGCGCCGCGCCCTCATGGCGCGCTCCTTGATCCTCCCCGTTGAGAATTTCCGCACCACCGTGTTCCCCGTCGTGTACTCCGTCAAGGCCGTGGCCTCCGGTGGCGTCGAGGTCATTCGAAAACTCTCCAAGGCGGCTTCTTCCTCTGCATCATCCAATGCCGCGGGTGCTGAGGTTGATTCCCACGCGGAGAAGCTTGTTGGGGTTTCGGATGTGGTCACTCACCTGGCGCCGTTCCTTGTTTCGTCGTTGGAGCCAGCGTTGATCTATGAGGTTGGGATCAATATGCTGTATCTGGCTGATGTGCCTGGTGGGAAGCCTGAATGGGCCTCGCAATCGATCATTGCGATTCTGACGTTGTGGGATCGGCTGGACTTTGCTTCTGCTAGGGAGAGCATTGTTAGGGCGGTTGTCACCAATTTGCATCTCCTTGATCTTCACATGCAGGTATCACTGTTCAAGAGGTTACTTTTAATGGTTAAAAACCTGAGAGCAGAATCAGATCGAATGTATGCTCTAGCATGTATATGTAGAACGGCTCTTTGTGTACATCTATTCGCCAAGGAAAGTGTACGAAGAGGGCAGAAACCTCTTCCCGGAACGGATATAGCTTCCCTTTTTGAGGATGCCAGAGTGAATGATGATCTTAATAGCATTACAAGTAAAAGTATATTTAGGGAGGAGCTAGTTGCATCGCTGGTGGAAAGTTGCTTTCAGCTGTCTCTTCCATTGCCTGAACAAAATAACACGGGCATGGAGAGTAGGGTCATTGGAGCTTTGGCATATGGAACTGGTTATGGTGCATTAAACTGGACTGAACCTGCTTTGGAAGTAGTGGAAGTTTGTCGGCCTTGTGTTAAATGGGATTGCGACGGCCGCACCTACGCGGTTGACTGCTACTTGAAGTTGCTTGTTAGGCTATGTTACATATATGATACTCGGGGTGGGGTAAAAAGAGTCAAAGATGGAGCTTCTCAGGACCAAATTTTGAATGAAACTAGATTGCAAAACTTGCAACGTGAACTTGTGAAGGACTTGCATGAGGTTAATACACCAAGAATGTTGGCCCGCCTTATTTGGGCTATTGCAGAGCACATAGATATAGAAGGATTGGATCCACTCCTAGCAGACGACCCAGATGATCCTCTTAATGTCATTATATCAAATATTCACAAGGTTCTTTTCAATGTCGATTCAACTGCAGAAACAACAAATAGAGTTCAAGATGTACAGGCAGTTCTAATATCTGCTCAACGGCTGGGATCACGCCACCCTAGGGCTGGTCAGTTACTTACCAAAGAGCTTGAAGAGTTTAGGAACAATCCTTTGGCTGATTCTGTCAGCAAGCATCAATGTCGTTTGATATTGCAAAGAATCAAATATGCTACAAGTCATCAAGACAATAAGTGGGCAGGGGTAACAGAAGCTAGAGGGGATTACCCATTTAGCCACCACAAATTAACTGTTCAGTTTTATGAAGCATCTGCTGCTCAGGATAGAAAGTTGGAAGGATTGGTTCACAAGGCTATTCTAGAGTTATGGAGACCTGACCCCAGTGAACTAACCCTTTTACTCACAAAAGGAGTTGATTCTACTTTACTGAAGGTTCCTCCAAATGCAATTACTTTGACTGGAAGCAGTGATCCTTGCTATGTTGAAGGTTATCATTTGGCTGATGCAAGTGATGGGAGGATCACTCTGCATTTGAAGGTCTTAAACTTAACTGAGCTTGAATTAAATCGGGTGGATGTACGCGTGGGATTATCAGGTGCATTATATTATATGGATGGCTCTTCTCAAGCTGTGCGGCAATTGCGTGGTCTTGTTTCACAGGATCCAGTGTTGTGCAGTGTGACAGTTGGTGTTTCCCACTTTGAAAGATGTGCCCTTTGGGTTCAAGTATTGTATTACCCATTCTATGGTAGTAGTGCTGTCAGAGACTATGAAGGTGACTATGCCGAGGAGGATCCTCAAATCATGAGACAGAAGAGAAGCCTAAGGCCTGAATTAGGTGAACCTGTGATTTTGAGATGTCAGCCATATAAAATTCCATTGACTGAGCTTCTTTTGCCACACCAAATATCACCTGTTGAGTTTTTCCGACTGTGGCCCAGTTTGCCAGCTATTGTAGAATATACTGGCACATATACATATGAAGGAAGTGGCTTTAAGGCTACTGCAGCCCAGCAGTATGGTGCATCTCCTTTCTTAAGTGGACTGAAATCCTTGTCTTCCAAACCATTCCACAAAGTTTGTTCACATATTATCCGCACAGTGGCAGGGTTTGAGATGTGTTATGCTGCCAAAACTTGGCATGGTGGCTTCTTGGGCATGATGATTTTTGGTGCTAGTGAAGTGAGTAGAAATGTGGACTTAGGTGATGAGACTACAACCATGCTGTGCAAGTTTGTGGTTCGTGCATCCGATTCATCTATTACCAAGGAGATCGGATCAGACCTTCAGGGTTGGTTGGATGACCTTACTGATGGTGGAGCGGAATATATGCCTGAAGATGAAGTGAAGGTAGCTGCAGCCGAGAGGCTTCGCATATCAATGGAAAGGATAGCCTTGTTGAAGGCAGCCCAACCACGACCCAAGACTCCAAAATCTGATGACGAAGATGAAGAGGAGGAATATGACAATAATAAAGAAAAGAAAGATGGTGAAGAAGACGAGAAACCAAAGGGGCCATCAACTCTATCGAAACTAACTGCTGAGGAAGCTGAACATCAAGCTCTTCAAGCAGCAGTACTACAGGAGTGGCATATGATCTGCAAGGATCGAACTACTGAAGTTAATTAA
>Glyma16g06580.1 sequence type=predicted peptide gene model=Glyma16g06580 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MDILFAQIQADLRSNDALRQSGALLQALQQSAAGRDIAVIAKTAVEEIVAAPASAVCKKLAFDLIRSTRLTPDLWETVCGGIRTDLHFPDPDVAAAAVSILAAIPSYRLAKLISDCNKEISDCFDSPSDSLRFSATETLGCVLARDDLVTLCENNVNLLDRVSAWWARVGSNMLDRSDAVSKVAFESVGRLFQEFSSKRMSKLAGDKLVDSENSLAIRSNWVSSMVDFVWRKRRALMARSLILPVENFRTTVFPVVYSVKAVASGGVEVIRKLSKAASSSASSNAAGAEVDSHAEKLVGVSDVVTHLAPFLVSSLEPALIYEVGINMLYLADVPGGKPEWASQSIIAILTLWDRLDFASARESIVRAVVTNLHLLDLHMQVSLFKRLLLMVKNLRAESDRMYALACICRTALCVHLFAKESVRRGQKPLPGTDIASLFEDARVNDDLNSITSKSIFREELVASLVESCFQLSLPLPEQNNTGMESRVIGALAYGTGYGALNWTEPALEVVEVCRPCVKWDCDGRTYAVDCYLKLLVRLCYIYDTRGGVKRVKDGASQDQILNETRLQNLQRELVKDLHEVNTPRMLARLIWAIAEHIDIEGLDPLLADDPDDPLNVIISNIHKVLFNVDSTAETTNRVQDVQAVLISAQRLGSRHPRAGQLLTKELEEFRNNPLADSVSKHQCRLILQRIKYATSHQDNKWAGVTEARGDYPFSHHKLTVQFYEASAAQDRKLEGLVHKAILELWRPDPSELTLLLTKGVDSTLLKVPPNAITLTGSSDPCYVEGYHLADASDGRITLHLKVLNLTELELNRVDVRVGLSGALYYMDGSSQAVRQLRGLVSQDPVLCSVTVGVSHFERCALWVQVLYYPFYGSSAVRDYEGDYAEEDPQIMRQKRSLRPELGEPVILRCQPYKIPLTELLLPHQISPVEFFRLWPSLPAIVEYTGTYTYEGSGFKATAAQQYGASPFLSGLKSLSSKPFHKVCSHIIRTVAGFEMCYAAKTWHGGFLGMMIFGASEVSRNVDLGDETTTMLCKFVVRASDSSITKEIGSDLQGWLDDLTDGGAEYMPEDEVKVAAAERLRISMERIALLKAAQPRPKTPKSDDEDEEEEYDNNKEKKDGEEDEKPKGPSTLSKLTAEEAEHQALQAAVLQEWHMICKDRTTEVN*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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