SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
|
A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G40840 | AT | Annotation by Michelle Graham. TAIR10: Rad21/Rec8-like family protein | chr5:16359611-16363722 REVERSE LENGTH=810 | SoyBase | E_val: 1.00E-15 | ISS |
| GO:0000724 | GO-bp | Annotation by Michelle Graham. GO Biological Process: double-strand break repair via homologous recombination | SoyBase | N/A | ISS |
| GO:0000911 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cytokinesis by cell plate formation | SoyBase | N/A | ISS |
| GO:0006261 | GO-bp | Annotation by Michelle Graham. GO Biological Process: DNA-dependent DNA replication | SoyBase | N/A | ISS |
| GO:0006275 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of DNA replication | SoyBase | N/A | ISS |
| GO:0006302 | GO-bp | Annotation by Michelle Graham. GO Biological Process: double-strand break repair | SoyBase | N/A | ISS |
| GO:0006306 | GO-bp | Annotation by Michelle Graham. GO Biological Process: DNA methylation | SoyBase | N/A | ISS |
| GO:0006355 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent | SoyBase | N/A | ISS |
| GO:0007129 | GO-bp | Annotation by Michelle Graham. GO Biological Process: synapsis | SoyBase | N/A | ISS |
| GO:0007131 | GO-bp | Annotation by Michelle Graham. GO Biological Process: reciprocal meiotic recombination | SoyBase | N/A | ISS |
| GO:0009555 | GO-bp | Annotation by Michelle Graham. GO Biological Process: pollen development | SoyBase | N/A | ISS |
| GO:0009560 | GO-bp | Annotation by Michelle Graham. GO Biological Process: embryo sac egg cell differentiation | SoyBase | N/A | ISS |
| GO:0010212 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to ionizing radiation | SoyBase | N/A | ISS |
| GO:0010332 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to gamma radiation | SoyBase | N/A | ISS |
| GO:0010564 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of cell cycle process | SoyBase | N/A | ISS |
| GO:0016444 | GO-bp | Annotation by Michelle Graham. GO Biological Process: somatic cell DNA recombination | SoyBase | N/A | ISS |
| GO:0022402 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cell cycle process | SoyBase | N/A | ISS |
| GO:0031047 | GO-bp | Annotation by Michelle Graham. GO Biological Process: gene silencing by RNA | SoyBase | N/A | ISS |
| GO:0043687 | GO-bp | Annotation by Michelle Graham. GO Biological Process: post-translational protein modification | SoyBase | N/A | ISS |
| GO:0045893 | GO-bp | Annotation by Michelle Graham. GO Biological Process: positive regulation of transcription, DNA-dependent | SoyBase | N/A | ISS |
| GO:0051322 | GO-bp | Annotation by Michelle Graham. GO Biological Process: anaphase | SoyBase | N/A | ISS |
| GO:0051726 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of cell cycle | SoyBase | N/A | ISS |
| GO:0000228 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nuclear chromosome | SoyBase | N/A | ISS |
| GO:0000798 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nuclear cohesin complex | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0003674 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: molecular function | SoyBase | N/A | ISS |
| PTHR12585 | Panther | SCC1 / RAD21 FAMILY MEMBER | JGI | ISS | |
| PTHR12585:SF17 | Panther | JGI | ISS | ||
| PF04824 | PFAM | Conserved region of Rad21 / Rec8 like protein | JGI | ISS | |
| PF04825 | PFAM | N terminus of Rad21 / Rec8 like protein | JGI | ISS | |
| UniRef100_G7L499 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Double-strand-break repair protein rad21-like protein n=1 Tax=Medicago truncatula RepID=G7L499_MEDTR | SoyBase | E_val: 2.00E-24 | ISS |
| UniRef100_I1MLL1 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MLL1_SOYBN | SoyBase | E_val: 0 | ISS |
|
Glyma16g06471 not represented in the dataset |
Glyma16g06471 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma19g25036 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.16g060000 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma16g06471.1 sequence type=CDS gene model=Glyma16g06471 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTCTAAGGCCAAGCTCACTCGTTTCACAAGTGACCCTGTGAGGATTGCTGCTTTCTGCTTCAAGAACCTGAAGAAAACTCAGGTTCTTGATGCTGACATTTCTTCTGCTGTTGACAAGATTTTGCAAGAAATGGATGGTGTATCCTATAGAGTGCTGGGCTATCTTCTTCTTGGCACTATCAGAATATTCTCCCGAAAGGTTGAATATGTGCTTGAGGACTGCAACGAGCAAGCAATGCGTAACTTACATGCCAGATACTATTTTGCTTGGACTCCGCCTGAAAGCTTAAACTTTCAGTTTGAGGAATTTGATGTCGGTGAAAATACCAGCTCTTTTGATCAAGATATAGTGGGAAATGCTTTACTATCTAAACTGTTGAATATGATGGACGATGAAGTTTCTCCACAAAATAGTCCTACTGATTTACTACCGGAAAGCTGGGATAAATTTCAAAGCAGCATATCAGGCTTTCAAGAAAATGTTTCAGATGAAGATGATGAAAGGCTTAGTGTTATTCCACCTAAGTCAAAAAATGTTGATGCAACTCCTCAGTCAAAGTTTCAAGGATATTCAGCTGGAAGACCACAACGAGATTCTGCTACAAAAGAGTCATTGCATGTTTCCACACCAGCTGCGAGGGATCATCCTCCCTTTTTAAGGAAAAGAAGAATTATTCTTGATAGAATGATTCTCCTGCCTAGCAAGGTAGTTAGAAAGAACATAGAGAGTGCAAAGGACTTGCTTCGTTTCCCTTTCCCGAGGGAATCACGTCGTACTTTACTTAATGCACGCTGTGTGAAGAAACACAGAGAATCTCCCACTTCCAGTCTTCCTGATAGATTCTATGAGCCTTTGCTTCCATGTTCTTCCTCTGAGCTTCAACTCCAATTCTCTAAAAGGAAAATGAAATTACCTAATTCCCTAAAGATTGTGGAAACTCCAGGGAATCCAGATGTGCCAGAATCTCCCACTGCTGGCCCTCTGCTAAGCCCTTCCCAATCTTCATTTTCCCTTGAAATTGAGGAAACTCCAAGAATGTTAGATGTACCTCAATCTCAGGATTCTAGCATTCAAATGAATGAAGTGCCTAATTTGATTGATGAGGAAATAAATTCATGTGCAACAAATGAATCAGAATCATGTAAGAACTCTTGCAAATCGTCATTTAAGAAAGTTGCAAGTTGCTTGCATCAGAGTTTTCTACATGCAAGAAAAGAAAGAGAGGACACCATAAACTTTTCACAAGTCTTTGGAGGCCAAGCACGGAAAGAATCTGCCCTGTTGTTTTATGAAGTACTGGTTTTGAAAACTTCAGGATACGTGGATGTGAAGCAACAAGAAGCTTATGGTGATATTGCAATCTGTAGACTCCCGAAATTAGATCAGATTTTTTTATTATGTTTGGGGGTTTAA
>Glyma16g06471.1 sequence type=predicted peptide gene model=Glyma16g06471 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MSKAKLTRFTSDPVRIAAFCFKNLKKTQVLDADISSAVDKILQEMDGVSYRVLGYLLLGTIRIFSRKVEYVLEDCNEQAMRNLHARYYFAWTPPESLNFQFEEFDVGENTSSFDQDIVGNALLSKLLNMMDDEVSPQNSPTDLLPESWDKFQSSISGFQENVSDEDDERLSVIPPKSKNVDATPQSKFQGYSAGRPQRDSATKESLHVSTPAARDHPPFLRKRRIILDRMILLPSKVVRKNIESAKDLLRFPFPRESRRTLLNARCVKKHRESPTSSLPDRFYEPLLPCSSSELQLQFSKRKMKLPNSLKIVETPGNPDVPESPTAGPLLSPSQSSFSLEIEETPRMLDVPQSQDSSIQMNEVPNLIDEEINSCATNESESCKNSCKSSFKKVASCLHQSFLHARKEREDTINFSQVFGGQARKESALLFYEVLVLKTSGYVDVKQQEAYGDIAICRLPKLDQIFLLCLGV*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
|
|
|
