Glyma16g06250 - SoyBase

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Report for Sequence Feature Glyma16g06250

Feature Type:	gene_model
Chromosome:	Gm16
Start:	5677299
stop:	5684049
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma16g06250

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G40870	AT	Annotation by Michelle Graham. TAIR10: uridine kinase/uracil phosphoribosyltransferase 1 \| chr5:16375021-16378384 FORWARD LENGTH=486	SoyBase	E_val: 0	ISS
GO:0000394	GO-bp	Annotation by Michelle Graham. GO Biological Process: RNA splicing, via endonucleolytic cleavage and ligation	SoyBase	N/A	ISS
GO:0006094	GO-bp	Annotation by Michelle Graham. GO Biological Process: gluconeogenesis	SoyBase	N/A	ISS
GO:0007010	GO-bp	Annotation by Michelle Graham. GO Biological Process: cytoskeleton organization	SoyBase	N/A	ISS
GO:0009058	GO-bp	Annotation by Michelle Graham. GO Biological Process: biosynthetic process	SoyBase	N/A	ISS
GO:0009086	GO-bp	Annotation by Michelle Graham. GO Biological Process: methionine biosynthetic process	SoyBase	N/A	ISS
GO:0009616	GO-bp	Annotation by Michelle Graham. GO Biological Process: virus induced gene silencing	SoyBase	N/A	ISS
GO:0010050	GO-bp	Annotation by Michelle Graham. GO Biological Process: vegetative phase change	SoyBase	N/A	ISS
GO:0010498	GO-bp	Annotation by Michelle Graham. GO Biological Process: proteasomal protein catabolic process	SoyBase	N/A	ISS
GO:0016310	GO-bp	Annotation by Michelle Graham. GO Biological Process: phosphorylation	SoyBase	N/A	ISS
GO:0044206	GO-bp	Annotation by Michelle Graham. GO Biological Process: UMP salvage	SoyBase	N/A	ISS
GO:2000904	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of starch metabolic process	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0005829	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosol	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0004845	GO-mf	Annotation by Michelle Graham. GO Molecular Function: uracil phosphoribosyltransferase activity	SoyBase	N/A	ISS
GO:0004849	GO-mf	Annotation by Michelle Graham. GO Molecular Function: uridine kinase activity	SoyBase	N/A	ISS
GO:0005524	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATP binding	SoyBase	N/A	ISS
GO:0016301	GO-mf	Annotation by Michelle Graham. GO Molecular Function: kinase activity	SoyBase	N/A	ISS
KOG4203	KOG	Armadillo/beta-Catenin/plakoglobin	JGI		ISS
PTHR10285	Panther	URIDINE KINASE RELATED	JGI		ISS
PF00156	PFAM	Phosphoribosyl transferase domain	JGI		ISS
PF00485	PFAM	Phosphoribulokinase / Uridine kinase family	JGI		ISS
UniRef100_I1MLJ3	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Uridine kinase n=2 Tax=Glycine max RepID=I1MLJ3_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_I1MLJ3	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uridine kinase n=2 Tax=Glycine max RepID=I1MLJ3_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma16g06250

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma16g06250

Paralog	Evidence	Comments
Glyma19g25360	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma16g06250 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.16g058200	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma16g06250

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma16g06250

Limit To All Plant Sequences

>Glyma16g06250.2   sequence type=transcript   gene model=Glyma16g06250   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TCTATAAATATTTATTGAGTGTGCTAAAAAAATTTGAGATTCTGTCCACCTAAATTTTTTAGTCAGAAAAAAAAAAAGTTTGTTTCCTTTGTCATTAGTGGCGTGGGAAAAGAAACAAAGGAGTCATAACACAAGGCATATTCGACGCATTCCAAATTTCTTCCATCTACTACTACCAGTCTCCCATTTCTTGGTTGTTACACACAAAAAAGCAGAGTCTGCAGCACTCAAACGAAACGACAGTGACCAAAACAGAAAAACGACATTACCCAGAGAGCGACGATGCCGGAAGAAACGACGTCGATCGACTACGTGATGGAGGCTGCATCTGGGCCCCACTTCTCCGGCCTGAGACTCGACGGCCGGGTCCCGTCCTCCGCCACCGCCGCGTCCTCCACTCCCGATTCAACCCTAACCCTCGATTCCCTTCCCAATCAACCCTTCGTCATAGGAGTTTCTGGAGGTACTGCCTCGGGCAAAACCACCGTCTGCGATATGATCATTCAGCAACTCCACGATCACCGCGTTGTCCTCGTAAATCAGGACTCGTTTTATCGCGGGTTGAATCCTGAAGAGTTGGAACGTGTTCACGAGTACAATTTCGACCACCCTGATGCTTTTGACACGGAGCAGTTGTTAGAGTGCACGAGGAAGCTCATCAGTGGCCAGGGAGTGCATGTTCCCATTTATGACTTCAAGAAGCACCAACGCTCTTCCGATAGTTTTCGCCAGGTGAATGCCTCTGATGTGATTATATTGGAGGGGATTCTTGTGTTCCATGATCAGCGCGTGCGGGATCTGATGAACATGAAGATCTTTGTTGACGCAGATGCTGATGTGAGACTTGCTCGTAGAATTAGGCGTGACACAGTGGAGAGGGGCAGGGATATAAACTCTGTTCTTGAACAGTATGCAAAATTTGTTAAGCCTGCATTTGATGATTTTGTTCTACCATCAAAAAAGTATGCTGATGTGATCATTCCTCGTGGAGGTGATAATCATGTTGCCATTGATTTGATTGTGCAACATATCCGTACAAAGCTCGGCCAACATGATCTATGCAAAATATATCCAAATGTCTATGTTATTCAGTCTACATTCCAGATCAGGGGAATGCATACGTTGATTCGTGACCGAGACATATCAAAGCATGATTTTGTATTTTATTCAGATCGACTTATACGCCTGGTTGTTGAGCATGGTCTAGGTCATCTGCCTTTCACCGAAAAGCAAGTGGTTACTCCCACAGGATCTGTTTATACTGGAGTTGATTTCTGCAAAAAATTGTGTGGTGTTTCAATTGTTCGAAGCTAACACTTCCCTTGTTTGATAAGCTTAATG

Coding sequences of Glyma16g06250

Limit To All Plant Sequences

>Glyma16g06250.1   sequence type=CDS   gene model=Glyma16g06250   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCCGGAAGAAACGACGTCGATCGACTACGTGATGGAGGCTGCATCTGGGCCCCACTTCTCCGGCCTGAGACTCGACGGCCGGGTCCCGTCCTCCGCCACCGCCGCGTCCTCCACTCCCGATTCAACCCTAACCCTCGATTCCCTTCCCAATCAACCCTTCGTCATAGGAGTTTCTGGAGGTACTGCCTCGGGCAAAACCACCGTCTGCGATATGATCATTCAGCAACTCCACGATCACCGCGTTGTCCTCGTAAATCAGGACTCGTTTTATCGCGGGTTGAATCCTGAAGAGTTGGAACGTGTTCACGAGTACAATTTCGACCACCCTGATGCTTTTGACACGGAGCAGTTGTTAGAGTGCACGAGGAAGCTCATCAGTGGCCAGGGAGTGCATGTTCCCATTTATGACTTCAAGAAGCACCAACGCTCTTCCGATAGTTTTCGCCAGGTGAATGCCTCTGATGTGATTATATTGGAGGGGATTCTTGTGTTCCATGATCAGCGCGTGCGGGATCTGATGAACATGAAGATCTTTGTTGACGCAGATGCTGATGTGAGACTTGCTCGTAGAATTAGGCGTGACACAGTGGAGAGGGGCAGGGATATAAACTCTGTTCTTGAACAGTATGCAAAATTTGTTAAGCCTGCATTTGATGATTTTGTTCTACCATCAAAAAAGTATGCTGATGTGATCATTCCTCGTGGAGGTGATAATCATGTTGCCATTGATTTGATTGTGCAACATATCCGTACAAAGCTCGGCCAACATGATCTATGCAAAATATATCCAAATGTCTATGTTATTCAGTCTACATTCCAGATCAGGGGAATGCATACGTTGATTCGTGACCGAGACATATCAAAGCATGATTTTGTATTTTATTCAGATCGACTTATACGCCTGGTTGTTGAGCATGGTCTAGGTCATCTGCCTTTCACCGAAAAGCAAGTGGTTACTCCCACAGGATCTGTTTATACTGGAGTTGATTTCTGCAAAAAATTGTGTGGTGTTTCAATTGTTCGAAGTGGTGAGAGCATGGAAAATGCACTTCGTGCATGTTGCAAAGGCATTAAAATTGGTAAAATTCTGATTCACCGGGATGGAGACAATGGAAAACAGCTTATATATGAGAAGCTCCCCAAGGATATTTCAGAACGGCATGTCTTGCTTCTTGACCCTGTCCTGGCCACAGGTAACTCTGCCAACCAAGCCATTGAATTACTCATTCAGAAAGGAGTACCAGAAAGTCACATTATATTCCTGAATCTCATTTCTGCTCCTGAGGGAATCCATTGCGTGTGCAAAAGGTTTCCATCATTGAAGATTGTCACATCTGAGATTGACATTGAAATAAATGAAGAGTATCGTGTTATCCCTGGATTGGGGGAATTTGGTGATCGATACTTCGGCACCGATGATTAG

>Glyma16g06250.2   sequence type=CDS   gene model=Glyma16g06250   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCCGGAAGAAACGACGTCGATCGACTACGTGATGGAGGCTGCATCTGGGCCCCACTTCTCCGGCCTGAGACTCGACGGCCGGGTCCCGTCCTCCGCCACCGCCGCGTCCTCCACTCCCGATTCAACCCTAACCCTCGATTCCCTTCCCAATCAACCCTTCGTCATAGGAGTTTCTGGAGGTACTGCCTCGGGCAAAACCACCGTCTGCGATATGATCATTCAGCAACTCCACGATCACCGCGTTGTCCTCGTAAATCAGGACTCGTTTTATCGCGGGTTGAATCCTGAAGAGTTGGAACGTGTTCACGAGTACAATTTCGACCACCCTGATGCTTTTGACACGGAGCAGTTGTTAGAGTGCACGAGGAAGCTCATCAGTGGCCAGGGAGTGCATGTTCCCATTTATGACTTCAAGAAGCACCAACGCTCTTCCGATAGTTTTCGCCAGGTGAATGCCTCTGATGTGATTATATTGGAGGGGATTCTTGTGTTCCATGATCAGCGCGTGCGGGATCTGATGAACATGAAGATCTTTGTTGACGCAGATGCTGATGTGAGACTTGCTCGTAGAATTAGGCGTGACACAGTGGAGAGGGGCAGGGATATAAACTCTGTTCTTGAACAGTATGCAAAATTTGTTAAGCCTGCATTTGATGATTTTGTTCTACCATCAAAAAAGTATGCTGATGTGATCATTCCTCGTGGAGGTGATAATCATGTTGCCATTGATTTGATTGTGCAACATATCCGTACAAAGCTCGGCCAACATGATCTATGCAAAATATATCCAAATGTCTATGTTATTCAGTCTACATTCCAGATCAGGGGAATGCATACGTTGATTCGTGACCGAGACATATCAAAGCATGATTTTGTATTTTATTCAGATCGACTTATACGCCTGGTTGTTGAGCATGGTCTAGGTCATCTGCCTTTCACCGAAAAGCAAGTGGTTACTCCCACAGGATCTGTTTATACTGGAGTTGATTTCTGCAAAAAATTGTGTGGTGTTTCAATTGTTCGAAGCTAA

Predicted protein sequences of Glyma16g06250

Limit To All Plant Sequences

>Glyma16g06250.1   sequence type=predicted peptide   gene model=Glyma16g06250   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MPEETTSIDYVMEAASGPHFSGLRLDGRVPSSATAASSTPDSTLTLDSLPNQPFVIGVSGGTASGKTTVCDMIIQQLHDHRVVLVNQDSFYRGLNPEELERVHEYNFDHPDAFDTEQLLECTRKLISGQGVHVPIYDFKKHQRSSDSFRQVNASDVIILEGILVFHDQRVRDLMNMKIFVDADADVRLARRIRRDTVERGRDINSVLEQYAKFVKPAFDDFVLPSKKYADVIIPRGGDNHVAIDLIVQHIRTKLGQHDLCKIYPNVYVIQSTFQIRGMHTLIRDRDISKHDFVFYSDRLIRLVVEHGLGHLPFTEKQVVTPTGSVYTGVDFCKKLCGVSIVRSGESMENALRACCKGIKIGKILIHRDGDNGKQLIYEKLPKDISERHVLLLDPVLATGNSANQAIELLIQKGVPESHIIFLNLISAPEGIHCVCKRFPSLKIVTSEIDIEINEEYRVIPGLGEFGDRYFGTDD*

>Glyma16g06250.2   sequence type=predicted peptide   gene model=Glyma16g06250   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MPEETTSIDYVMEAASGPHFSGLRLDGRVPSSATAASSTPDSTLTLDSLPNQPFVIGVSGGTASGKTTVCDMIIQQLHDHRVVLVNQDSFYRGLNPEELERVHEYNFDHPDAFDTEQLLECTRKLISGQGVHVPIYDFKKHQRSSDSFRQVNASDVIILEGILVFHDQRVRDLMNMKIFVDADADVRLARRIRRDTVERGRDINSVLEQYAKFVKPAFDDFVLPSKKYADVIIPRGGDNHVAIDLIVQHIRTKLGQHDLCKIYPNVYVIQSTFQIRGMHTLIRDRDISKHDFVFYSDRLIRLVVEHGLGHLPFTEKQVVTPTGSVYTGVDFCKKLCGVSIVRS*

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