Glyma16g06220 - SoyBase

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Report for Sequence Feature Glyma16g06220

Feature Type:	gene_model
Chromosome:	Gm16
Start:	5647429
stop:	5651466
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma16g06220

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G15750	AT	Annotation by Michelle Graham. TAIR10: Alpha-L RNA-binding motif/Ribosomal protein S4 family protein \| chr5:5141449-5142701 FORWARD LENGTH=182	SoyBase	E_val: 2.00E-104	ISS
GO:0006626	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein targeting to mitochondrion	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0022627	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosolic small ribosomal subunit	SoyBase	N/A	ISS
GO:0003723	GO-mf	Annotation by Michelle Graham. GO Molecular Function: RNA binding	SoyBase	N/A	ISS
GO:0019843	GO-mf	Annotation by Michelle Graham. GO Molecular Function: rRNA binding	SoyBase	N/A	ISS
KOG4655	KOG	U3 small nucleolar ribonucleoprotein (snoRNP) component	JGI		ISS
PTHR11831	Panther	30S 40S RIBOSOMAL PROTEIN	JGI		ISS
PTHR11831:SF1	Panther	40S RIBOSOMAL PROTEIN S9	JGI		ISS
PF01479	PFAM	S4 domain	JGI		ISS
UniRef100_B7FMK3	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: U3 small nucleolar ribonucleoprotein IMP3 n=2 Tax=Medicago truncatula RepID=B7FMK3_MEDTR	SoyBase	E_val: 3.00E-110	ISS
UniRef100_I1MLJ0	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=1 Tax=Glycine max RepID=I1MLJ0_SOYBN	SoyBase	E_val: 1.00E-128	ISS

Expression Patterns of Glyma16g06220

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma16g06220 not represented in the dataset	Glyma16g06220 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma16g06220

Paralog	Evidence	Comments
Glyma19g25640	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma16g06220 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.16g058000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma16g06220

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma16g06220

Limit To All Plant Sequences

>Glyma16g06220.2   sequence type=transcript   gene model=Glyma16g06220   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TAAAATCATACCACTATAGCATCGTTGGGGTCTGTTGCCTTGCACTGCTATTCAAGATTGATAACTATGAGTGAAGTATAGAAGTGAAAAACAACGAGGAAGCTAAAGTTTCATGAAAAGAAGCTTTTGAAGAAGGTAATTTTTTTGGAATGGAAGAGGGAAGGGGGTCACAGAGAGAACCTGATTATGCAACGCTACCATATTACTGGATTGGACGATTACAAAAAATATTCAGGTTTATGCCATATGGTTCAGAAGTTAGTAAACATATTGAAACAGATGGATCAAAAGGATCCTTTTCGGATTGATATGACTGACAAGCTTCTGGAAAAACTTTACAACATGGGTGTGATTCCAACCAGGCAAAGCATCATGCTATGCAAACGCTTAACTGTGTCATCCTTCTGCAGGCATAGGCTCTCAACAGTTTTGGTGCGACTAAAATTTGCAGAGCACTTGAAAGAAGCCGTCACATACATTGAGCAAGGGCATATACGAGTTGGTCCAGAGACAGTTACAGACCCAGCTTTCCTTGTAACTAGAAACATGGAAGACTTCGTTACATTGGTGGATTCATTCAAAATAAAGAGAAAGGTGCTTCAGTACAATGACAAGTTGGATGACTATGATTTAATGAATTAAGTGGAAGGCTAATTAGTTGTAGTTTACTGTATGAATCGTGGACGAGTGTTTCCCTTGGCAGGTAGCTTAAACAGGC

>Glyma16g06220.3   sequence type=transcript   gene model=Glyma16g06220   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CTAGAAGTATAAGTTAGCCTTGCAGTTTCAAATAGAAAGATTGTATTCATATAGCGACCACTTTTTAACTTTTTATTTCTTCTAGGTATTAGCCTGAAGGGAAAAAAAATATTATCAGCTATTATTTTCTCACATATCTTTTTCTTCCTTTTGGATGACAGTTACAACATGGGTGTGATTCCAACCAGGCAAAGCATCATGCTATGCAAACGCTTAACTGTGTCATCCTTCTGCAGGCATAGGCTCTCAACAGTTTTGGTGCGACTAAAATTTGCAGAGCACTTGAAAGAAGCCGTCACATACATTGAGCAAGGGCATATACGAGTTGGTCCAGAGACAGTTACAGACCCAGCTTTCCTTGTAACTAGAAACATGGAAGACTTCGTTACATTGGTGGATTCATTCAAAATAAAGAGAAAGGTGCTTCAGTACAATGACAAGTTGGATGACTATGATTTAATGAATTAAGTGGAAGGCTAATTAGTTGTAGTTTACTGTATGAATCGTGGACGAGTGTTTCCCTTGGCAGGTAGCTTAAACAGGCTTGGAATTTTTTTTCTTTTCAATTTTTAAATTCATGCCAGATTAAGGTGATGATGTAATGAACCTGGAAATTAGTGAATTAGTAAATCATGATAGTGATATCAAATATTTGATATGTATCCTGCATTTTTCCAGTCAATTGTTTAAGGATCAGA

Coding sequences of Glyma16g06220

Limit To All Plant Sequences

>Glyma16g06220.1   sequence type=CDS   gene model=Glyma16g06220   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGGAGGAAGCTAAAGTTTCATGAAAAGAAGCTTTTGAAGAAGGTAATTTTTTTGGAATGGAAGAGGGAAGGGGGTCACAGAGAGAACCTGATTATGCAACGCTACCATATTACTGGATTGGACGATTACAAAAAATATTCAGGTTTATGCCATATGGTTCAGAAGTTAGTAAACATATTGAAACAGATGGATCAAAAGGATCCTTTTCGGATTGATATGACTGACAAGCTTCTGGAAAAACTTTACAACATGGGTGTGATTCCAACCAGGCAAAGCATCATGCTATGCAAACGCTTAACTGTGTCATCCTTCTGCAGGCATAGGCTCTCAACAGTTTTGGTGCGACTAAAATTTGCAGAGCACTTGAAAGAAGCCGTCACATACATTGAGCAAGGGCATATACGAGTTGGTCCAGAGACAGTTACAGACCCAGCTTTCCTTGTAACTAGAAACATGGAAGACTTCGTTACATTGGTGGATTCATTCAAAATAAAGAGAAAGGTGCTTCAGTACAATGACAAGTTGGATGACTATGATTTAATGAATTAA

>Glyma16g06220.2   sequence type=CDS   gene model=Glyma16g06220   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCAACGCTACCATATTACTGGATTGGACGATTACAAAAAATATTCAGGTTTATGCCATATGGTTCAGAAGTTAGTAAACATATTGAAACAGATGGATCAAAAGGATCCTTTTCGGATTGATATGACTGACAAGCTTCTGGAAAAACTTTACAACATGGGTGTGATTCCAACCAGGCAAAGCATCATGCTATGCAAACGCTTAACTGTGTCATCCTTCTGCAGGCATAGGCTCTCAACAGTTTTGGTGCGACTAAAATTTGCAGAGCACTTGAAAGAAGCCGTCACATACATTGAGCAAGGGCATATACGAGTTGGTCCAGAGACAGTTACAGACCCAGCTTTCCTTGTAACTAGAAACATGGAAGACTTCGTTACATTGGTGGATTCATTCAAAATAAAGAGAAAGGTGCTTCAGTACAATGACAAGTTGGATGACTATGATTTAATGAATTAA

>Glyma16g06220.3   sequence type=CDS   gene model=Glyma16g06220   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGTGTGATTCCAACCAGGCAAAGCATCATGCTATGCAAACGCTTAACTGTGTCATCCTTCTGCAGGCATAGGCTCTCAACAGTTTTGGTGCGACTAAAATTTGCAGAGCACTTGAAAGAAGCCGTCACATACATTGAGCAAGGGCATATACGAGTTGGTCCAGAGACAGTTACAGACCCAGCTTTCCTTGTAACTAGAAACATGGAAGACTTCGTTACATTGGTGGATTCATTCAAAATAAAGAGAAAGGTGCTTCAGTACAATGACAAGTTGGATGACTATGATTTAATGAATTAA

Predicted protein sequences of Glyma16g06220

Limit To All Plant Sequences

>Glyma16g06220.1   sequence type=predicted peptide   gene model=Glyma16g06220   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGRKLKFHEKKLLKKVIFLEWKREGGHRENLIMQRYHITGLDDYKKYSGLCHMVQKLVNILKQMDQKDPFRIDMTDKLLEKLYNMGVIPTRQSIMLCKRLTVSSFCRHRLSTVLVRLKFAEHLKEAVTYIEQGHIRVGPETVTDPAFLVTRNMEDFVTLVDSFKIKRKVLQYNDKLDDYDLMN*

>Glyma16g06220.2   sequence type=predicted peptide   gene model=Glyma16g06220   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MQRYHITGLDDYKKYSGLCHMVQKLVNILKQMDQKDPFRIDMTDKLLEKLYNMGVIPTRQSIMLCKRLTVSSFCRHRLSTVLVRLKFAEHLKEAVTYIEQGHIRVGPETVTDPAFLVTRNMEDFVTLVDSFKIKRKVLQYNDKLDDYDLMN*

>Glyma16g06220.3   sequence type=predicted peptide   gene model=Glyma16g06220   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGVIPTRQSIMLCKRLTVSSFCRHRLSTVLVRLKFAEHLKEAVTYIEQGHIRVGPETVTDPAFLVTRNMEDFVTLVDSFKIKRKVLQYNDKLDDYDLMN*

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