SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G27110 | AT | Annotation by Michelle Graham. TAIR10: Peptidase family M48 family protein | chr3:9998006-9999892 FORWARD LENGTH=344 | SoyBase | E_val: 9.00E-178 | ISS |
| GO:0006508 | GO-bp | Annotation by Michelle Graham. GO Biological Process: proteolysis | SoyBase | N/A | ISS |
| GO:0005886 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane | SoyBase | N/A | ISS |
| GO:0016020 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: membrane | SoyBase | N/A | ISS |
| GO:0004222 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: metalloendopeptidase activity | SoyBase | N/A | ISS |
| PTHR10120 | Panther | CAAX PRENYL PROTEASE STE24 | JGI | ISS | |
| PF01435 | PFAM | Peptidase family M48 | JGI | ISS | |
| UniRef100_B9RBI4 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Metalloendopeptidase, putative n=1 Tax=Ricinus communis RepID=B9RBI4_RICCO | SoyBase | E_val: 3.00E-180 | ISS |
| UniRef100_UPI0001D62D18 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI0001D62D18 related cluster n=1 Tax=unknown RepID=UPI0001D62D18 | SoyBase | E_val: 0 | ISS |
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Glyma16g06130 not represented in the dataset |
Glyma16g06130 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.16g056900 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma16g06130.1 sequence type=CDS gene model=Glyma16g06130 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCTTCCACGCCCTTCTCCACTTTCTGCCACTTCCACAAACCCACCCTCCTTTTCTTAGCTTCCGACGGGTTCAGGCTCGGTGGCGCTCCGGCGATCGCCTTCGGAAAGGTTCGGAAGAACCGCAAAATGGGAATATTCCCCGTTTGCAGAGCTGGTTCTGCCGTCGTCTTCCGCGACCTCGACGCCGACGACTTTCGCCACCCTCTTGATCAACAGAATACGCTGCTACTGAGAGCAATTCCGGGATTGAACGAACTGGGAAAAGCTCTTCTAGGAACTGTATCTGAGCAGGTTATGCTCCTTGAAAACATTGGGACATCCGTCCTTGTTTCTAAAAATCAGCTTCCTGATCTTTACCACCTAATGGTCGAAGCTGCCGAAATATTAAATGTAGATGCCCCTGATCTATATGTTCGTCAAAGTCCTGTGCCAAATGCATATACATTAGCTATAAGTGGTAAACGACCTTTCGTTGTCATTCATACTAGCCTTGTGGAGCTCCTGACAAAAGCAGAGTTGCAGGCTGTTTTGGCTCATGAGCTGGGTCACCTAAAATGTGATCATGGTGTGTGGCTTACATATGCAAATATTCTAACCCTTGGAGCCTATTCTGTACCTGGTATTGGCGGTATGATAGCTCAGACTTTGGAAGAGCAGCTGTTCCGCTGGCTTCGAGCAGCTGAGTTGACTTGTGATCGTGCAGCTCTTCTTGTTGCTCAAGACCCTAAGGTTGTCATCTCTGTCCTCATGAAATTAGCTGGGGGATGTCCATCTATGGCTGATCAACTAAATGTGGATGCATTCCTGGAGCAAGCTCGCTCTTATGAAAAAGCTGCTTCCAGCCCAATTGGGTGGTATATAAGGAATGCACAAACAAGGCAACTGTCACATCCTCTGCCTGTTCTACGTGCTAGCGAAATTGATGAATGGTCAAGAACTCCAGCTTATAAATCTCTTTTGAAACGAGGAATTCAGATCAAATCTTAG
>Glyma16g06130.1 sequence type=predicted peptide gene model=Glyma16g06130 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MASTPFSTFCHFHKPTLLFLASDGFRLGGAPAIAFGKVRKNRKMGIFPVCRAGSAVVFRDLDADDFRHPLDQQNTLLLRAIPGLNELGKALLGTVSEQVMLLENIGTSVLVSKNQLPDLYHLMVEAAEILNVDAPDLYVRQSPVPNAYTLAISGKRPFVVIHTSLVELLTKAELQAVLAHELGHLKCDHGVWLTYANILTLGAYSVPGIGGMIAQTLEEQLFRWLRAAELTCDRAALLVAQDPKVVISVLMKLAGGCPSMADQLNVDAFLEQARSYEKAASSPIGWYIRNAQTRQLSHPLPVLRASEIDEWSRTPAYKSLLKRGIQIKS*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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