Report for Sequence Feature Glyma16g05490
Feature Type: gene_model
Chromosome: Gm16
Start: 4802294
stop: 4803581
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma16g05490
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT1G12830 AT
Annotation by Michelle Graham. TAIR10: unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 39778 Blast hits to 22088 proteins in 1060 species: Archae - 152; Bacteria - 6161; Metazoa - 14109; Fungi - 6144; Plants - 2156; Viruses - 601; Other Eukaryotes - 10455 (source: NCBI BLink). | chr1:4374412-4375053 REVERSE LENGTH=213
SoyBase E_val: 7.00E-11 ISS
GO:0006626 GO-bp
Annotation by Michelle Graham. GO Biological Process: protein targeting to mitochondrion
SoyBase N/A ISS
GO:0008150 GO-bp
Annotation by Michelle Graham. GO Biological Process: biological process
SoyBase N/A ISS
GO:0009560 GO-bp
Annotation by Michelle Graham. GO Biological Process: embryo sac egg cell differentiation
SoyBase N/A ISS
GO:0005634 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: nucleus
SoyBase N/A ISS
GO:0003674 GO-mf
Annotation by Michelle Graham. GO Molecular Function: molecular function
SoyBase N/A ISS
UniRef100_I1MLB9 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MLB9_SOYBN
SoyBase E_val: 8.00E-101 ISS
UniRef100_Q9LPW6 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: F13K23.8 protein n=1 Tax=Arabidopsis thaliana RepID=Q9LPW6_ARATH
SoyBase E_val: 3.00E-08 ISS
Expression Patterns of Glyma16g05490
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Paralogs of Glyma16g05490
Paralog Evidence Comments
Glyma19g27300 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma16g05490 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.16g050400 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma16g05490
Coding sequences of Glyma16g05490
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma16g05490.1 sequence type=CDS gene model=Glyma16g05490 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGCTGAACACAACGACCCACCCCAAGAACCCACATTGCCCTCCTCCAAGCGCAAGTCCGATCTCGACCTCCAAGACCTCCCTTCCAAAATCCCCAAGCTCGACCTCAAAGAAAACGACGACAAAGACCTCCAAAACGACCATGAAGGAGAGAACGACGAAAGGGAAGAGGACCGAAAGGGGAAGGGGATTATGCGTGACGACAAGGGCAAAGGGAAAATGATACTAGAAGAAGAAGAAGACGACGACGACGATGACGATTCAGATGATGGTGGTGATAGTGATGACGACGGGAGCGATTTCTCCGACGACCCACTCATGGAGGTCGATTTGAATAACATTCTGCCGTCCAGGACTCGCGGCCGGACGGCGAGTTCCGGAGTTCGCATTGACGGTGACTCGGGGAATGCTGCCGCCGCCGCTTCCGCTGCGGGCATCAGCGATGACGATAGCGACAGTGACGACAGCGATGCTTGA
Predicted protein sequences of Glyma16g05490
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma16g05490.1 sequence type=predicted peptide gene model=Glyma16g05490 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MAEHNDPPQEPTLPSSKRKSDLDLQDLPSKIPKLDLKENDDKDLQNDHEGENDEREEDRKGKGIMRDDKGKGKMILEEEEDDDDDDDSDDGGDSDDDGSDFSDDPLMEVDLNNILPSRTRGRTASSGVRIDGDSGNAAAAASAAGISDDDSDSDDSDA*