Glyma16g05451 - SoyBase

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Report for Sequence Feature Glyma16g05451

Feature Type:	gene_model
Chromosome:	Gm16
Start:	4760293
stop:	4763724
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma16g05451

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G14040	AT	Annotation by Michelle Graham. TAIR10: phosphate transporter 3;1 \| chr5:4531059-4532965 REVERSE LENGTH=375	SoyBase	E_val: 6.00E-74	ISS
GO:0006007	GO-bp	Annotation by Michelle Graham. GO Biological Process: glucose catabolic process	SoyBase	N/A	ISS
GO:0006098	GO-bp	Annotation by Michelle Graham. GO Biological Process: pentose-phosphate shunt	SoyBase	N/A	ISS
GO:0006810	GO-bp	Annotation by Michelle Graham. GO Biological Process: transport	SoyBase	N/A	ISS
GO:0009651	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to salt stress	SoyBase	N/A	ISS
GO:0005618	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cell wall	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
GO:0005743	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrial inner membrane	SoyBase	N/A	ISS
GO:0005774	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: vacuolar membrane	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
PTHR24089	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR24089:SF22	Panther	SUBFAMILY NOT NAMED	JGI		ISS
UniRef100_Q8W198	UniRef	Annotation by Michelle Graham. Best UniRef hit: Phosphate transporter n=1 Tax=Glycine max RepID=Q8W198_SOYBN	SoyBase	E_val: 1.00E-87	ISS
UniRef100_Q8W198	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Phosphate transporter n=1 Tax=Glycine max RepID=Q8W198_SOYBN	SoyBase	E_val: 1.00E-87	ISS

Expression Patterns of Glyma16g05451

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma16g05451 not represented in the dataset	Glyma16g05451 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma16g05451 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments

References for Glyma16g05451

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma16g05451

Limit To All Plant Sequences

>Glyma16g05451.1   sequence type=CDS   gene model=Glyma16g05451   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATGAAGTTTGCTTCGTTTGAGACCATTGTAGAGCTGATCTATAAGCACGCCATCCCAACACCAAAGAATGAGTGCACCAAAGGCCTGCAACTTGGTGTCAGTTTTGCTGGTGGATATATTGCTGGTGTACTTTGTGCAATTGTGTCTCATCCTGCTGATAATCTTGTCTCTTTTCTGAACAATGCAAAAGGAGCAACAGTTGGTGATGCGGTGAAGAAGCTTGGCCTGTGGGGTCTCTTTACCCGTGGTCTTCCCCTCCGTATTGTTATGATTGGAACTCTTACTGGAGCCCAATGGGGAATATATGATGCATTCAAAGTGTCTGTCGGATTGCCAACCACTGGTGGTCCTGCTCCTGCAGCTGCTCTAGCTTCTGATGCTGAGCTTGCAAAGGCATAG

Predicted protein sequences of Glyma16g05451

Limit To All Plant Sequences

>Glyma16g05451.1   sequence type=predicted peptide   gene model=Glyma16g05451   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MMKFASFETIVELIYKHAIPTPKNECTKGLQLGVSFAGGYIAGVLCAIVSHPADNLVSFLNNAKGATVGDAVKKLGLWGLFTRGLPLRIVMIGTLTGAQWGIYDAFKVSVGLPTTGGPAPAAALASDAELAKA*

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