Glyma16g05430 - SoyBase

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Report for Sequence Feature Glyma16g05430

Feature Type:	gene_model
Chromosome:	Gm16
Start:	4751273
stop:	4754115
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma16g05430

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G26782	AT	Annotation by Michelle Graham. TAIR10: Tetratricopeptide repeat (TPR)-like superfamily protein \| chr3:9850594-9852682 FORWARD LENGTH=659	SoyBase	E_val: 0	ISS
PTHR24015	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR24015:SF76	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF01535	PFAM	PPR repeat	JGI		ISS
UniRef100_I1MLB3	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MLB3_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q2HUK9	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Pentatricopeptide repeat-containing protein n=1 Tax=Medicago truncatula RepID=Q2HUK9_MEDTR	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma16g05430

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma16g05430 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.16g049800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma16g05430

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma16g05430

Limit To All Plant Sequences

>Glyma16g05430.1   sequence type=CDS   gene model=Glyma16g05430   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGACGATGACTCAGTCTGTGTTCAGAACATCATCAACTGCACGGACCAAAACCGCGAACCTCACGAGCATGTTCGGCAAATACGTGGACAAAACCAGCGTCCATAGTTGGAACACCGTAATCGCGGACCTCTCTCGAAGCGGAGATTCAGTTGAAGCGCTAAGCGCCTTCGCCTCAATGCGGAAGCTGTCTCTGCACCCGAACCGCTCCACGTTCCCCTGCGCCATCAAGGCCTGCGCCGCGCTCTCCGACCTCCGTGCCGGCGCCCAGGCCCACCAGCAGGCCTTCGCCTTCGGTTTCGGCCACGACATCTTCGTCTCCTCCGCGCTCATCGACATGTACTCCAAATGCGCCCGCCTCGACCACGCCTGCCACCTGTTCGACGAAATTCCCGAACGAAACGTGGTCTCCTGGACGTCCATCATTGCCGGTTACGTCCAAAACGACCGCGCTAGGGACGCGGTTCGCATCTTTAAGGAGCTTCTGGTTGAGGAGAGTGGGAGTCTGGAGTCCGAGGATGGTGTTTTCGTGGACTCGGTGCTTCTGGGGTGTGTTGTTTCGGCGTGTTCGAAGGTGGGGCGGAGGAGTGTGACCGAAGGTGTTCATGGGTGGGTGATCAAGAGGGGGTTTGAGGGGAGTGTTGGGGTTGGGAATACTTTGATGGATGCTTATGCAAAGTGTGGGGAGATGGGTGTGGCGAGGAAGGTGTTTGATGGGATGGATGAGAGTGATGACTATTCTTGGAACTCTATGATTGCTGAGTATGCGCAGAATGGTTTGTCTGCTGAGGCTTTCTGTGTTTTTGGTGAGATGGTGAAGAGTGGCAAGGTCAGATATAATGCAGTGACGTTGTCCGCGGTGTTGTTAGCCTGCGCAAGTTCAGGAGCTTTGCAACTGGGGAAGTGCATACATGATCAGGTTATAAAGATGGATTTGGAAGATAGTGTGTTTGTAGGTACTTCTATTGTTGATATGTACTGCAAATGTGGGAGAGTTGAGATGGCTAGGAAGGCATTTGATCGCATGAAAGTGAAGAATGTTAAGTCATGGACTGCTATGATTGCTGGTTATGGAATGCATGGCTGTGCAAAAGAGGCTATGGAAATCTTCTACAAGATGATAAGGTCTGGAGTCAAGCCGAATTACATTACTTTTGTGTCGGTTTTAGCTGCTTGCAGCCATGCTGGTATGTTAAAAGAAGGCTGGCATTGGTTTAATAGAATGAAATGTGAATTTAATGTAGAACCTGGGATTGAGCATTATTCGTGCATGGTTGATCTCCTTGGGCGTGCTGGCTGTCTTAATGAGGCTTATGGTTTGATACAGGAAATGAATGTGAAGCCTGATTTTATAATCTGGGGTTCCCTTCTTGGGGCTTGTAGGATTCACAAGAATGTGGAACTAGGGGAGATCTCTGCAAGAAAACTATTCGAGTTAGATCCAAGTAATTGTGGGTACTATGTGCTACTCTCCAATATTTATGCTGATGCTGGAAGGTGGGCCGATGTTGAGAGGATGAGGATATTGATGAAGAGTCGTGGATTACTTAAAACCCCTGGATTTAGTATAGTGGAACTCAAAGGTCGGATACATGTATTTTTAGTTGGAGACAAAGAGCATCCTCAACATGAGAAGATTTATGAGTATTTGGACAAATTAAATGTCAAGCTGCAAGAACTTGGGTATATGCCAAATGTGACATCAGTGCTTCATGACGTTGATGAGGAAGAGAAAGGAATGGTTCTAAGAGTTCATAGTGAGAAACTAGCTGTTGCCTTTGGAATCATGAATTCAGTTCCTGGATCAATAATCCAAATCATAAAAAATCTTAGAATTTGTGGTGACTGCCACTCTGCAATTAAATTGATTTCCAAAGCAGTAAATCGAGAAATTGTTGTAAGAGATTCTAAGCGGTTTCATCATTTCAAGGATGGGTTGTGTTCGTGTGGGGACTATTGGTGA

Predicted protein sequences of Glyma16g05430

Limit To All Plant Sequences

>Glyma16g05430.1   sequence type=predicted peptide   gene model=Glyma16g05430   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MTMTQSVFRTSSTARTKTANLTSMFGKYVDKTSVHSWNTVIADLSRSGDSVEALSAFASMRKLSLHPNRSTFPCAIKACAALSDLRAGAQAHQQAFAFGFGHDIFVSSALIDMYSKCARLDHACHLFDEIPERNVVSWTSIIAGYVQNDRARDAVRIFKELLVEESGSLESEDGVFVDSVLLGCVVSACSKVGRRSVTEGVHGWVIKRGFEGSVGVGNTLMDAYAKCGEMGVARKVFDGMDESDDYSWNSMIAEYAQNGLSAEAFCVFGEMVKSGKVRYNAVTLSAVLLACASSGALQLGKCIHDQVIKMDLEDSVFVGTSIVDMYCKCGRVEMARKAFDRMKVKNVKSWTAMIAGYGMHGCAKEAMEIFYKMIRSGVKPNYITFVSVLAACSHAGMLKEGWHWFNRMKCEFNVEPGIEHYSCMVDLLGRAGCLNEAYGLIQEMNVKPDFIIWGSLLGACRIHKNVELGEISARKLFELDPSNCGYYVLLSNIYADAGRWADVERMRILMKSRGLLKTPGFSIVELKGRIHVFLVGDKEHPQHEKIYEYLDKLNVKLQELGYMPNVTSVLHDVDEEEKGMVLRVHSEKLAVAFGIMNSVPGSIIQIIKNLRICGDCHSAIKLISKAVNREIVVRDSKRFHHFKDGLCSCGDYW*

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