Glyma16g05400 - SoyBase

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Report for Sequence Feature Glyma16g05400

Feature Type:	gene_model
Chromosome:	Gm16
Start:	4708973
stop:	4712890
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma16g05400

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G26760	AT	Annotation by Michelle Graham. TAIR10: NAD(P)-binding Rossmann-fold superfamily protein \| chr3:9843639-9844899 FORWARD LENGTH=300	SoyBase	E_val: 3.00E-130	ISS
GO:0008152	GO-bp	Annotation by Michelle Graham. GO Biological Process: metabolic process	SoyBase	N/A	ISS
GO:0009733	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to auxin stimulus	SoyBase	N/A	ISS
GO:0009741	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to brassinosteroid stimulus	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
GO:0000166	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleotide binding	SoyBase	N/A	ISS
GO:0008270	GO-mf	Annotation by Michelle Graham. GO Molecular Function: zinc ion binding	SoyBase	N/A	ISS
GO:0016491	GO-mf	Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity	SoyBase	N/A	ISS
KOG0725	KOG	Reductases with broad range of substrate specificities	JGI		ISS
PTHR24322	Panther	FAMILY NOT NAMED	JGI		ISS
PF00106	PFAM	short chain dehydrogenase	JGI		ISS
UniRef100_I1MLA9	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MLA9_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q2HUL4	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Sex determination protein tasselseed-2 n=2 Tax=Medicago truncatula RepID=Q2HUL4_MEDTR	SoyBase	E_val: 5.00E-167	ISS

Expression Patterns of Glyma16g05400

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma16g05400

Paralog	Evidence	Comments
Glyma19g27466	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma16g05400 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.16g049500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma16g05400

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma16g05400

Limit To All Plant Sequences

>Glyma16g05400.2   sequence type=transcript   gene model=Glyma16g05400   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TCTCCTTCCATAAATACACTCATCAACCTTCGTTTCTTTCTGTGCTTTCAATTCAACCTGTGAGATCCGCGAGCTAAAACTCCCACACTCCACAGCTTTTCTTGTTTTCCTTTCCTCAGATCAGATCTTGACGCCGTTATGCTTAGAACATTAGCTAGGGTGTTCAAGCGAGCCACCCTTGCCAATGACTTGCTTCAAAAACGCAGCAGATTCTATGCAACCACGGTTGGTGGAAGAAGGTTAGAAGGAAAAGTGGCACTCATAACTGGATCAGCAAGTGGACTCGGCAAGGCCACGGCCCATGAGTTTGTCCAGCATGGAGCCCAAGTAATCATTGCTGACAATGACACCAAACTAGGCCCACAAGTTGCAAAAGAGTTGGGCCCATCAGCCCACTACACAGAGTGCGACGTCACTGTGGAGGCCCAAGTGGCGGATGCCGTGAACGTTGCCGTGGCCCACTATGGCAAGCTGGACATCATGTACAACAATGCGGGCATCCCAGGCCCATCAATTCCACCAAGCATAGTAGACCTAGACCTTGATGAGTTTGATAGAGTCATGAGGATCAACATAAGGGGAATGATTGCTGGTATAAAGCATGCGGCCCGGGTCATGATTCCAGTGGGATCAGGGTCCATTCTATGCACATCTAGCATAAGTGGGGTTTTGGGTGGGCTTGGGCCTCATCCTTACACAATATCAAAGTTTACAATACCAGGGGTAGTGAAATCTTTGGCTAGTGAGCTATGCAAAGTTGGGATTAGGATCAATTGCATATCACCAGCTCCAATTCCTACACCTATGGTTTTGGCACAAATTGGAAAGTTTTATCCTGGTTTAACCCAAGAACAGATAGTGGGCATTGTGAATGGGTTTGGTGAGCTCAAAGGTGCTAAGTGTGAGGACATTGATGTGGCAAAGGCTGCATTGTACTTAGCATCAGATGAAGCAAAGTTTATTTCAGGCCAAAATCTCATTGTGGATGGAGGGTTCACCAGCTTTAAAAATCTTACATTCCCTTCTCCAGATCAAACTGCTTAACCTCAACTGTTAATTGAGTATAATTTCTATGCATTATTGTCGGTGTAAATCAACCAACGAGGAATCATGTTAGGTATATGACAATTATAATTGGATGAGTTTAAAATTTCTTTATATTGTCAGTATATAGACTATTTTCTCTTGTTGATTTATGTAATGTATTATGGTTGGTTTAAGAGTATGTTGAAGTATTTTTTTTCTTTTATGGTTGGTTTATGAGTATGTTGAAGTATTTTTTTTCTTTTTTTCCAAATTTAAGAAGTCATCTATTTATGTTTTGATCCAATGAAAAGAATGCCGTACAAAAATTGAGATTCAGTGAAGTTCCGAAGGACTACATAAGGGTGATGAGATCAAACTCCTGTGGTATATGTTTAAGGCATAGATAGAGATAGGGATAAGAGTGAAGAGTCCTATATCTGGTCTGGCCCAAGGGATGGTAGACATGAGCAAGCTGCATGTGCCCTACATATTTGATACTTCGTTATGGTTACTTTTGTTTACACACATTTATTATGATGTACGTGGGACATAGGTGAAGGTACAAGTGATTCCATTCTGCAT

Coding sequences of Glyma16g05400

Limit To All Plant Sequences

>Glyma16g05400.1   sequence type=CDS   gene model=Glyma16g05400   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCTTAGAACATTAGCTAGGGTGTTCAAGCGAGCCACCCTTGCCAATGACTTGCTTCAAAAACGCAGCAGATTCTATGCAACCACGGTTGGTGGAAGAAGTGACAGGTTAGAAGGAAAAGTGGCACTCATAACTGGATCAGCAAGTGGACTCGGCAAGGCCACGGCCCATGAGTTTGTCCAGCATGGAGCCCAAGTAATCATTGCTGACAATGACACCAAACTAGGCCCACAAGTTGCAAAAGAGTTGGGCCCATCAGCCCACTACACAGAGTGCGACGTCACTGTGGAGGCCCAAGTGGCGGATGCCGTGAACGTTGCCGTGGCCCACTATGGCAAGCTGGACATCATGTACAACAATGCGGGCATCCCAGGCCCATCAATTCCACCAAGCATAGTAGACCTAGACCTTGATGAGTTTGATAGAGTCATGAGGATCAACATAAGGGGAATGATTGCTGGTATAAAGCATGCGGCCCGGGTCATGATTCCAGTGGGATCAGGGTCCATTCTATGCACATCTAGCATAAGTGGGGTTTTGGGTGGGCTTGGGCCTCATCCTTACACAATATCAAAGTTTACAATACCAGGGGTAGTGAAATCTTTGGCTAGTGAGCTATGCAAAGTTGGGATTAGGATCAATTGCATATCACCAGCTCCAATTCCTACACCTATGGTTTTGGCACAAATTGGAAAGTTTTATCCTGGTTTAACCCAAGAACAGATAGTGGGCATTGTGAATGGGTTTGGTGAGCTCAAAGGTGCTAAGTGTGAGGACATTGATGTGGCAAAGGCTGCATTGTACTTAGCATCAGATGAAGCAAAGTTTATTTCAGGCCAAAATCTCATTGTGGATGGAGGGTTCACCAGCTTTAAAAATCTTACATTCCCTTCTCCAGATCAAACTGCTTAA

>Glyma16g05400.2   sequence type=CDS   gene model=Glyma16g05400   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCTTAGAACATTAGCTAGGGTGTTCAAGCGAGCCACCCTTGCCAATGACTTGCTTCAAAAACGCAGCAGATTCTATGCAACCACGGTTGGTGGAAGAAGGTTAGAAGGAAAAGTGGCACTCATAACTGGATCAGCAAGTGGACTCGGCAAGGCCACGGCCCATGAGTTTGTCCAGCATGGAGCCCAAGTAATCATTGCTGACAATGACACCAAACTAGGCCCACAAGTTGCAAAAGAGTTGGGCCCATCAGCCCACTACACAGAGTGCGACGTCACTGTGGAGGCCCAAGTGGCGGATGCCGTGAACGTTGCCGTGGCCCACTATGGCAAGCTGGACATCATGTACAACAATGCGGGCATCCCAGGCCCATCAATTCCACCAAGCATAGTAGACCTAGACCTTGATGAGTTTGATAGAGTCATGAGGATCAACATAAGGGGAATGATTGCTGGTATAAAGCATGCGGCCCGGGTCATGATTCCAGTGGGATCAGGGTCCATTCTATGCACATCTAGCATAAGTGGGGTTTTGGGTGGGCTTGGGCCTCATCCTTACACAATATCAAAGTTTACAATACCAGGGGTAGTGAAATCTTTGGCTAGTGAGCTATGCAAAGTTGGGATTAGGATCAATTGCATATCACCAGCTCCAATTCCTACACCTATGGTTTTGGCACAAATTGGAAAGTTTTATCCTGGTTTAACCCAAGAACAGATAGTGGGCATTGTGAATGGGTTTGGTGAGCTCAAAGGTGCTAAGTGTGAGGACATTGATGTGGCAAAGGCTGCATTGTACTTAGCATCAGATGAAGCAAAGTTTATTTCAGGCCAAAATCTCATTGTGGATGGAGGGTTCACCAGCTTTAAAAATCTTACATTCCCTTCTCCAGATCAAACTGCTTAA

Predicted protein sequences of Glyma16g05400

Limit To All Plant Sequences

>Glyma16g05400.1   sequence type=predicted peptide   gene model=Glyma16g05400   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLRTLARVFKRATLANDLLQKRSRFYATTVGGRSDRLEGKVALITGSASGLGKATAHEFVQHGAQVIIADNDTKLGPQVAKELGPSAHYTECDVTVEAQVADAVNVAVAHYGKLDIMYNNAGIPGPSIPPSIVDLDLDEFDRVMRINIRGMIAGIKHAARVMIPVGSGSILCTSSISGVLGGLGPHPYTISKFTIPGVVKSLASELCKVGIRINCISPAPIPTPMVLAQIGKFYPGLTQEQIVGIVNGFGELKGAKCEDIDVAKAALYLASDEAKFISGQNLIVDGGFTSFKNLTFPSPDQTA*

>Glyma16g05400.2   sequence type=predicted peptide   gene model=Glyma16g05400   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLRTLARVFKRATLANDLLQKRSRFYATTVGGRRLEGKVALITGSASGLGKATAHEFVQHGAQVIIADNDTKLGPQVAKELGPSAHYTECDVTVEAQVADAVNVAVAHYGKLDIMYNNAGIPGPSIPPSIVDLDLDEFDRVMRINIRGMIAGIKHAARVMIPVGSGSILCTSSISGVLGGLGPHPYTISKFTIPGVVKSLASELCKVGIRINCISPAPIPTPMVLAQIGKFYPGLTQEQIVGIVNGFGELKGAKCEDIDVAKAALYLASDEAKFISGQNLIVDGGFTSFKNLTFPSPDQTA*

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