Glyma16g05390 - SoyBase

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Report for Sequence Feature Glyma16g05390

Feature Type:	gene_model
Chromosome:	Gm16
Start:	4696528
stop:	4700754
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma16g05390

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G26744	AT	Annotation by Michelle Graham. TAIR10: basic helix-loop-helix (bHLH) DNA-binding superfamily protein \| chr3:9832953-9834790 REVERSE LENGTH=494	SoyBase	E_val: 1.00E-115	ISS
GO:0000085	GO-bp	Annotation by Michelle Graham. GO Biological Process: G2 phase of mitotic cell cycle	SoyBase	N/A	ISS
GO:0006355	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0009409	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to cold	SoyBase	N/A	ISS
GO:0009410	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to xenobiotic stimulus	SoyBase	N/A	ISS
GO:0009640	GO-bp	Annotation by Michelle Graham. GO Biological Process: photomorphogenesis	SoyBase	N/A	ISS
GO:0009793	GO-bp	Annotation by Michelle Graham. GO Biological Process: embryo development ending in seed dormancy	SoyBase	N/A	ISS
GO:0009845	GO-bp	Annotation by Michelle Graham. GO Biological Process: seed germination	SoyBase	N/A	ISS
GO:0009909	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of flower development	SoyBase	N/A	ISS
GO:0009933	GO-bp	Annotation by Michelle Graham. GO Biological Process: meristem structural organization	SoyBase	N/A	ISS
GO:0010162	GO-bp	Annotation by Michelle Graham. GO Biological Process: seed dormancy process	SoyBase	N/A	ISS
GO:0010182	GO-bp	Annotation by Michelle Graham. GO Biological Process: sugar mediated signaling pathway	SoyBase	N/A	ISS
GO:0010228	GO-bp	Annotation by Michelle Graham. GO Biological Process: vegetative to reproductive phase transition of meristem	SoyBase	N/A	ISS
GO:0010440	GO-bp	Annotation by Michelle Graham. GO Biological Process: stomatal lineage progression	SoyBase	N/A	ISS
GO:0016567	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein ubiquitination	SoyBase	N/A	ISS
GO:0016571	GO-bp	Annotation by Michelle Graham. GO Biological Process: histone methylation	SoyBase	N/A	ISS
GO:0016579	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein deubiquitination	SoyBase	N/A	ISS
GO:0019915	GO-bp	Annotation by Michelle Graham. GO Biological Process: lipid storage	SoyBase	N/A	ISS
GO:0043687	GO-bp	Annotation by Michelle Graham. GO Biological Process: post-translational protein modification	SoyBase	N/A	ISS
GO:0045893	GO-bp	Annotation by Michelle Graham. GO Biological Process: positive regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0048522	GO-bp	Annotation by Michelle Graham. GO Biological Process: positive regulation of cellular process	SoyBase	N/A	ISS
GO:0050826	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to freezing	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003677	GO-mf	Annotation by Michelle Graham. GO Molecular Function: DNA binding	SoyBase	N/A	ISS
GO:0003700	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity	SoyBase	N/A	ISS
PTHR23042	Panther	CIRCADIAN PROTEIN CLOCK/ARNT/BMAL/PAS	JGI		ISS
PTHR23042:SF24	Panther	AMS (ABORTED MICROSPORES), DNA BINDING / TRANSCRIP	JGI		ISS
PF00010	PFAM	Helix-loop-helix DNA-binding domain	JGI		ISS
UniRef100_E7CZZ3	UniRef	Annotation by Michelle Graham. Best UniRef hit: ICEa n=2 Tax=Glycine max RepID=E7CZZ3_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_E7CZZ3	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: ICEa n=2 Tax=Glycine max RepID=E7CZZ3_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma16g05390

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma16g05390 not represented in the dataset	Glyma16g05390 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma16g05390

Paralog	Evidence	Comments
Glyma19g27483	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma16g05390 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.16g049400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma16g05390

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma16g05390

Limit To All Plant Sequences

>Glyma16g05390.2   sequence type=transcript   gene model=Glyma16g05390   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CAAAAACTTTAACAGAACGCAGTTACTTCCTTCTTTTCCTTTCCTCTCTATCAGAACCTCATCATATCACACTCTGATGCGATAAGAGTTAAAGAAGAGAGTTTTGAGAGTTTCCTCCAAATAAAAAAATCAGTAACGGGAGCAGAGAGAAACAGACACACACTCACACATGGATAAACCACACCCCACCAACCGTTTCCCTCTCCATTCATTTTCTCGCCACAACAAAAAAACAAACATAGCAATATAGCATTATTATTACATAACCGTTCTGTTTCTCACCTTCTTCTCCTCACTTTTTTTTCTTGTTCTTTTCCCTCTTCTCCGTTTTTTCATGAATATGGAGCGCTACACGCTACCCGCACCACCCATTAATATTATTCTCGAGGAAGAAGAAGAAGAAGAAAACATTGCCATTGCCATGGGTGCCCCTCTTATCCCTTCCTTTAAATCCATGCTTCAACACCAACAACAACAACCTGACTCTTACTTCAACTTCAACTTTAACTCTTCAATTAGTTCTGCTACCATACCCTTTGTTCCTAACATGGAATCTTTTCCTTCTCTTGACCCTTTCTCCCCTTCACTTTCATCACTTCCTTTCTTCAACAACAACAGCAGCAACAACATGGCATTTGACCCGGGTTTTGACTTGGGCCTGGACACTACTGGGCTTCACTCTTCTGTTCCTCCTGCTCCCCATCTTTTTTCCCAGGCCCAGATGGGCTTTGAGTTCTCGGAACTCGAGGCCCTCACTGGACCTGGGAATGGAAATAATGCCCCTTTTGCGGACGGGGCAAAGGTGGCTGCGGCCATGCTGCTGCGGCCACCTCCTCTCGATGGGGCGCAGCAGCAGCAGCAGCAGCCGACGCTGTACCGGAAGCGGAGGGGGACGGCGGCGGAAATTCCGGGGCTGGAGACGGTGAGGAGGAAGGGGAGGAAGTGGGAGGAAGGAGGAAGAGGAGGGGAGGGGGAGGAAGGGAGCAGTGCTGACGTGGATGGTTCCGGGTTGAACTATGAGTCTGATGAGCAGAATGAGAATAATGGGAACAATGGTTTGAAGCTGAGTGAGAATAATGGTGGAGATAACAAGGGGAAGAGGAAGGGGTTACCCGCCAAGAATCTCATGGCGGAGAGGCGCCGCCGGAAGAAACTCAATGATAGGTTGTACATGCTCAGGTCTGTTGTCCCCAAGATTAGCAAGATGGATAGGGCTTCAATACTTGGGGATGCAATTGACTACTTGAAGGAGTTGCTGCAGCGGATTAATGATCTTCATAACGAGCTAGAGTCAACTCCACCTGGCTCGTTGCTGACACCTTCTTCTACAAGCTTTCAGCCACTAACACCCACCCTGCCAACCCTTCCCTGCCGGGTCAAGGAGGAACTGTATCCTGGCACCTTGCCAAGCCCTAAAAACCAAGCTGCAAAGGTTGAGGTTAGAGTAAGGGAAGGGAGAGCTGTCAACATTCATATGTTCTGCACCCGCCGACCAGGTCTTTTGCTTTCTACCATGAGGGCTTTGGATAACCTCGGATTGGATGTACAGCAGGCTGTTATTAGCTGTTTTAATGGCTTTGCTTTAGATGTGTTCAAAGCCGAGGTATAATTCTCTCTCGTTTGCCAAGCTTCACTTGAACATATCTATTATTAACTTGCTTTACCATTATGATGCTTGTCATTGAACTTTATTTGGTCATTAGCACATTATGCCAAATGGCATTGCTTGTCCCTTGTAGCCAAGTAGTCAACCAAGACTAGTGGGAGA

Coding sequences of Glyma16g05390

Limit To All Plant Sequences

>Glyma16g05390.1   sequence type=CDS   gene model=Glyma16g05390   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAATATGGAGCGCTACACGCTACCCGCACCACCCATTAATATTATTCTCGAGGAAGAAGAAGAAGAAGAAAACATTGCCATTGCCATGGGTGCCCCTCTTATCCCTTCCTTTAAATCCATGCTTCAACACCAACAACAACAACCTGACTCTTACTTCAACTTCAACTTTAACTCTTCAATTAGTTCTGCTACCATACCCTTTGTTCCTAACATGGAATCTTTTCCTTCTCTTGACCCTTTCTCCCCTTCACTTTCATCACTTCCTTTCTTCAACAACAACAGCAGCAACAACATGGCATTTGACCCGGGTTTTGACTTGGGCCTGGACACTACTGGGCTTCACTCTTCTGTTCCTCCTGCTCCCCATCTTTTTTCCCAGGCCCAGATGGGCTTTGAGTTCTCGGAACTCGAGGCCCTCACTGGACCTGGGAATGGAAATAATGCCCCTTTTGCGGACGGGGCAAAGGTGGCTGCGGCCATGCTGCTGCGGCCACCTCCTCTCGATGGGGCGCAGCAGCAGCAGCAGCAGCCGACGCTGTACCGGAAGCGGAGGGGGACGGCGGCGGAAATTCCGGGGCTGGAGACGGTGAGGAGGAAGGGGAGGAAGTGGGAGGAAGGAGGAAGAGGAGGGGAGGGGGAGGAAGGGAGCAGTGCTGACGTGGATGGTTCCGGGTTGAACTATGAGTCTGATGAGCAGAATGAGAATAATGGGAACAATGGTTTGAAGCTGAGTGAGAATAATGGTGGAGATAACAAGGGGAAGAGGAAGGGGTTACCCGCCAAGAATCTCATGGCGGAGAGGCGCCGCCGGAAGAAACTCAATGATAGGTTGTACATGCTCAGGTCTGTTGTCCCCAAGATTAGCAAGATGGATAGGGCTTCAATACTTGGGGATGCAATTGACTACTTGAAGGAGTTGCTGCAGCGGATTAATGATCTTCATAACGAGCTAGAGTCAACTCCACCTGGCTCGTTGCTGACACCTTCTTCTACAAGCTTTCAGCCACTAACACCCACCCTGCCAACCCTTCCCTGCCGGGTCAAGGAGGAACTGTATCCTGGCACCTTGCCAAGCCCTAAAAACCAAGCTGCAAAGGTTGAGGTTAGAGTAAGGGAAGGGAGAGCTGTCAACATTCATATGTTCTGCACCCGCCGACCAGGTCTTTTGCTTTCTACCATGAGGGCTTTGGATAACCTCGGATTGGATGTACAGCAGGCTGTTATTAGCTGTTTTAATGGCTTTGCTTTAGATGTGTTCAAAGCCGAGCAATGCAGAGAAGGCCAGGATGTCCTCCCTGAGCAGATTAAAGCGGTGCTCTTGGATTCCGCGGGCTTCCATGGTATGATGTGA

>Glyma16g05390.2   sequence type=CDS   gene model=Glyma16g05390   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAATATGGAGCGCTACACGCTACCCGCACCACCCATTAATATTATTCTCGAGGAAGAAGAAGAAGAAGAAAACATTGCCATTGCCATGGGTGCCCCTCTTATCCCTTCCTTTAAATCCATGCTTCAACACCAACAACAACAACCTGACTCTTACTTCAACTTCAACTTTAACTCTTCAATTAGTTCTGCTACCATACCCTTTGTTCCTAACATGGAATCTTTTCCTTCTCTTGACCCTTTCTCCCCTTCACTTTCATCACTTCCTTTCTTCAACAACAACAGCAGCAACAACATGGCATTTGACCCGGGTTTTGACTTGGGCCTGGACACTACTGGGCTTCACTCTTCTGTTCCTCCTGCTCCCCATCTTTTTTCCCAGGCCCAGATGGGCTTTGAGTTCTCGGAACTCGAGGCCCTCACTGGACCTGGGAATGGAAATAATGCCCCTTTTGCGGACGGGGCAAAGGTGGCTGCGGCCATGCTGCTGCGGCCACCTCCTCTCGATGGGGCGCAGCAGCAGCAGCAGCAGCCGACGCTGTACCGGAAGCGGAGGGGGACGGCGGCGGAAATTCCGGGGCTGGAGACGGTGAGGAGGAAGGGGAGGAAGTGGGAGGAAGGAGGAAGAGGAGGGGAGGGGGAGGAAGGGAGCAGTGCTGACGTGGATGGTTCCGGGTTGAACTATGAGTCTGATGAGCAGAATGAGAATAATGGGAACAATGGTTTGAAGCTGAGTGAGAATAATGGTGGAGATAACAAGGGGAAGAGGAAGGGGTTACCCGCCAAGAATCTCATGGCGGAGAGGCGCCGCCGGAAGAAACTCAATGATAGGTTGTACATGCTCAGGTCTGTTGTCCCCAAGATTAGCAAGATGGATAGGGCTTCAATACTTGGGGATGCAATTGACTACTTGAAGGAGTTGCTGCAGCGGATTAATGATCTTCATAACGAGCTAGAGTCAACTCCACCTGGCTCGTTGCTGACACCTTCTTCTACAAGCTTTCAGCCACTAACACCCACCCTGCCAACCCTTCCCTGCCGGGTCAAGGAGGAACTGTATCCTGGCACCTTGCCAAGCCCTAAAAACCAAGCTGCAAAGGTTGAGGTTAGAGTAAGGGAAGGGAGAGCTGTCAACATTCATATGTTCTGCACCCGCCGACCAGGTCTTTTGCTTTCTACCATGAGGGCTTTGGATAACCTCGGATTGGATGTACAGCAGGCTGTTATTAGCTGTTTTAATGGCTTTGCTTTAGATGTGTTCAAAGCCGAGGTATAA

Predicted protein sequences of Glyma16g05390

Limit To All Plant Sequences

>Glyma16g05390.1   sequence type=predicted peptide   gene model=Glyma16g05390   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MNMERYTLPAPPINIILEEEEEEENIAIAMGAPLIPSFKSMLQHQQQQPDSYFNFNFNSSISSATIPFVPNMESFPSLDPFSPSLSSLPFFNNNSSNNMAFDPGFDLGLDTTGLHSSVPPAPHLFSQAQMGFEFSELEALTGPGNGNNAPFADGAKVAAAMLLRPPPLDGAQQQQQQPTLYRKRRGTAAEIPGLETVRRKGRKWEEGGRGGEGEEGSSADVDGSGLNYESDEQNENNGNNGLKLSENNGGDNKGKRKGLPAKNLMAERRRRKKLNDRLYMLRSVVPKISKMDRASILGDAIDYLKELLQRINDLHNELESTPPGSLLTPSSTSFQPLTPTLPTLPCRVKEELYPGTLPSPKNQAAKVEVRVREGRAVNIHMFCTRRPGLLLSTMRALDNLGLDVQQAVISCFNGFALDVFKAEQCREGQDVLPEQIKAVLLDSAGFHGMM*

>Glyma16g05390.2   sequence type=predicted peptide   gene model=Glyma16g05390   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MNMERYTLPAPPINIILEEEEEEENIAIAMGAPLIPSFKSMLQHQQQQPDSYFNFNFNSSISSATIPFVPNMESFPSLDPFSPSLSSLPFFNNNSSNNMAFDPGFDLGLDTTGLHSSVPPAPHLFSQAQMGFEFSELEALTGPGNGNNAPFADGAKVAAAMLLRPPPLDGAQQQQQQPTLYRKRRGTAAEIPGLETVRRKGRKWEEGGRGGEGEEGSSADVDGSGLNYESDEQNENNGNNGLKLSENNGGDNKGKRKGLPAKNLMAERRRRKKLNDRLYMLRSVVPKISKMDRASILGDAIDYLKELLQRINDLHNELESTPPGSLLTPSSTSFQPLTPTLPTLPCRVKEELYPGTLPSPKNQAAKVEVRVREGRAVNIHMFCTRRPGLLLSTMRALDNLGLDVQQAVISCFNGFALDVFKAEV*

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