Report for Sequence Feature Glyma16g05380
Feature Type: gene_model
Chromosome: Gm16
Start: 4685025
stop: 4690217
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma16g05380
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT5G13280 AT
Annotation by Michelle Graham. TAIR10: aspartate kinase 1 | chr5:4249516-4252654 FORWARD LENGTH=569
SoyBase E_val: 0 ISS
GO:0008152 GO-bp
Annotation by Michelle Graham. GO Biological Process: metabolic process
SoyBase N/A ISS
GO:0008652 GO-bp
Annotation by Michelle Graham. GO Biological Process: cellular amino acid biosynthetic process
SoyBase N/A ISS
GO:0009507 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: chloroplast
SoyBase N/A ISS
GO:0009570 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: chloroplast stroma
SoyBase N/A ISS
GO:0004072 GO-mf
Annotation by Michelle Graham. GO Molecular Function: aspartate kinase activity
SoyBase N/A ISS
GO:0016597 GO-mf
Annotation by Michelle Graham. GO Molecular Function: amino acid binding
SoyBase N/A ISS
KOG0456
KOG
Aspartate kinase
JGI ISS
PTHR21499 Panther
ASPARTATE KINASE
JGI ISS
PTHR21499:SF11 Panther
SUBFAMILY NOT NAMED
JGI ISS
PF00696 PFAM
Amino acid kinase family
JGI ISS
UniRef100_I1MLA6 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Aspartokinase n=1 Tax=Glycine max RepID=I1MLA6_SOYBN
SoyBase E_val: 0 ISS
UniRef100_UPI000233F345 UniRef
Annotation by Michelle Graham. Best UniRef hit: UPI000233F345 related cluster n=1 Tax=unknown RepID=UPI000233F345
SoyBase E_val: 0 ISS
Expression Patterns of Glyma16g05380
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Paralogs of Glyma16g05380
Paralog Evidence Comments
Glyma19g27500 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma16g05380 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.16g049300 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma16g05380
Coding sequences of Glyma16g05380
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma16g05380.2 sequence type=CDS gene model=Glyma16g05380 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
TACACGTGTGTCATGAAGTTTGGCGGCTCCTCTGTTGCCAATGCAGAAAGGATGAGAGAGGTTGCCAACCTTATTCTGAGCTTCCCGGAAGAGAGGCCTATAATTGTTCTCTCTGCCATGGGAAAGACAACTAACATGCTGTTGCTGGCTGGAGAAAAAGCTGTAAGCTGTGGAGTAACTATGGCTGATAGTATTGACGAGCTCAGCATTATAAAAGATCTGCATCTCAGGACTGTGGAAGAGCTTGGAGTGGACAGAAATGCTATTGAGACTATGATGAAAGAGTTGACTCCACGGACTCAAGATTATTTAGTTTCATTTGGAGAGTGCATGTCCACTAGGATCTTTGCTGCATATCTTAATACATTAGGAATTAGGGCCCGCCAATATGATGCATTTGAGATGGGTATTATAACATCTGATGACTTCACAAATGCTGACATTTTGGAAGCAACATATCCTGCTGTTGCAAAGAGGTTACATAGTGATTGGGTTTGTGATCCTGCTATTCCAATTGTTACAGGCTTCCTTGGAAAGGCACGAAAATCATGTGCAGTGACAACATTGGGTAGAGGAGGAAGTGATTTAACTGCTACAACTATTGGAAAAGCACTAGGGTTGCCAGAAATCCAGGTATGGAAAGATGTTGATGGTGTTCTAACCTGTGATCCAAATATATGCCCACAAGCAAAACCTGTTCCATATTTGACATTTGATGAGGCTGCTGAACTTGCATACTTTGGTGCTCAGGTCCTGCATCCACAGTCTATGAGACCTGCTAGAGAAAGTGATATTCCTGTTAGGGTTAAAAATTCCTACAACCCTAAAGCTCCAGGTACTCTCATTGCTAAGACAAGGGATATGAGCAAGGCATTATTAACTAGCATTGTTTTGAAACGTAATGTGACCATGTTAGATATTGTAAGCACTCGCATGCTTGGTCAGTTTGGGTTCCTTGCTAAGGTATTTTCAATATTCGAAGAGTTAGGTATATCAGTTGATGTTGTAGCTACAAGTGAAGTTAGTATTTCCTTGACATTGGATCCATCAAAGCTATGGAGCAGAGAACTAATTCAACAGGAACTTGACTATGTTGTCGAAGAACTGGAAAAAATTGCAGTAGTAAATCTCTTAAAGACCAGATCCATAATCTCTCTCATTGGAAATGTTCAGAGATCATCACTAATATTGGAGAAGGCCTTTCATGTTCTTCGAACTCTTGGGGTCACTGTTCAAATGATCTCTCAGGGTGCATCTAAGGTGAATATCTCGTTAGTTGTAAATGACAGTGAAGCAGAGCAGTGTGTCAGGGCTCTCCACAAAGCCTTTTTTGAAAGCGAACTCTTTGAATTAGAGAATGAATGCATACCTGGAAATGGTTCTGTTCCTGCATTATCTTAG
Predicted protein sequences of Glyma16g05380
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma16g05380.2 sequence type=predicted peptide gene model=Glyma16g05380 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
YTCVMKFGGSSVANAERMREVANLILSFPEERPIIVLSAMGKTTNMLLLAGEKAVSCGVTMADSIDELSIIKDLHLRTVEELGVDRNAIETMMKELTPRTQDYLVSFGECMSTRIFAAYLNTLGIRARQYDAFEMGIITSDDFTNADILEATYPAVAKRLHSDWVCDPAIPIVTGFLGKARKSCAVTTLGRGGSDLTATTIGKALGLPEIQVWKDVDGVLTCDPNICPQAKPVPYLTFDEAAELAYFGAQVLHPQSMRPARESDIPVRVKNSYNPKAPGTLIAKTRDMSKALLTSIVLKRNVTMLDIVSTRMLGQFGFLAKVFSIFEELGISVDVVATSEVSISLTLDPSKLWSRELIQQELDYVVEELEKIAVVNLLKTRSIISLIGNVQRSSLILEKAFHVLRTLGVTVQMISQGASKVNISLVVNDSEAEQCVRALHKAFFESELFELENECIPGNGSVPALS*