Glyma16g05380 - SoyBase

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Report for Sequence Feature Glyma16g05380

Feature Type:	gene_model
Chromosome:	Gm16
Start:	4685025
stop:	4690217
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma16g05380

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G13280	AT	Annotation by Michelle Graham. TAIR10: aspartate kinase 1 \| chr5:4249516-4252654 FORWARD LENGTH=569	SoyBase	E_val: 0	ISS
GO:0008152	GO-bp	Annotation by Michelle Graham. GO Biological Process: metabolic process	SoyBase	N/A	ISS
GO:0008652	GO-bp	Annotation by Michelle Graham. GO Biological Process: cellular amino acid biosynthetic process	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0009570	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast stroma	SoyBase	N/A	ISS
GO:0004072	GO-mf	Annotation by Michelle Graham. GO Molecular Function: aspartate kinase activity	SoyBase	N/A	ISS
GO:0016597	GO-mf	Annotation by Michelle Graham. GO Molecular Function: amino acid binding	SoyBase	N/A	ISS
KOG0456	KOG	Aspartate kinase	JGI		ISS
PTHR21499	Panther	ASPARTATE KINASE	JGI		ISS
PTHR21499:SF11	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF00696	PFAM	Amino acid kinase family	JGI		ISS
UniRef100_I1MLA6	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Aspartokinase n=1 Tax=Glycine max RepID=I1MLA6_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_UPI000233F345	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233F345 related cluster n=1 Tax=unknown RepID=UPI000233F345	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma16g05380

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma16g05380

Paralog	Evidence	Comments
Glyma19g27500	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma16g05380 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.16g049300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma16g05380

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma16g05380

Limit To All Plant Sequences

>Glyma16g05380.2   sequence type=CDS   gene model=Glyma16g05380   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TACACGTGTGTCATGAAGTTTGGCGGCTCCTCTGTTGCCAATGCAGAAAGGATGAGAGAGGTTGCCAACCTTATTCTGAGCTTCCCGGAAGAGAGGCCTATAATTGTTCTCTCTGCCATGGGAAAGACAACTAACATGCTGTTGCTGGCTGGAGAAAAAGCTGTAAGCTGTGGAGTAACTATGGCTGATAGTATTGACGAGCTCAGCATTATAAAAGATCTGCATCTCAGGACTGTGGAAGAGCTTGGAGTGGACAGAAATGCTATTGAGACTATGATGAAAGAGTTGACTCCACGGACTCAAGATTATTTAGTTTCATTTGGAGAGTGCATGTCCACTAGGATCTTTGCTGCATATCTTAATACATTAGGAATTAGGGCCCGCCAATATGATGCATTTGAGATGGGTATTATAACATCTGATGACTTCACAAATGCTGACATTTTGGAAGCAACATATCCTGCTGTTGCAAAGAGGTTACATAGTGATTGGGTTTGTGATCCTGCTATTCCAATTGTTACAGGCTTCCTTGGAAAGGCACGAAAATCATGTGCAGTGACAACATTGGGTAGAGGAGGAAGTGATTTAACTGCTACAACTATTGGAAAAGCACTAGGGTTGCCAGAAATCCAGGTATGGAAAGATGTTGATGGTGTTCTAACCTGTGATCCAAATATATGCCCACAAGCAAAACCTGTTCCATATTTGACATTTGATGAGGCTGCTGAACTTGCATACTTTGGTGCTCAGGTCCTGCATCCACAGTCTATGAGACCTGCTAGAGAAAGTGATATTCCTGTTAGGGTTAAAAATTCCTACAACCCTAAAGCTCCAGGTACTCTCATTGCTAAGACAAGGGATATGAGCAAGGCATTATTAACTAGCATTGTTTTGAAACGTAATGTGACCATGTTAGATATTGTAAGCACTCGCATGCTTGGTCAGTTTGGGTTCCTTGCTAAGGTATTTTCAATATTCGAAGAGTTAGGTATATCAGTTGATGTTGTAGCTACAAGTGAAGTTAGTATTTCCTTGACATTGGATCCATCAAAGCTATGGAGCAGAGAACTAATTCAACAGGAACTTGACTATGTTGTCGAAGAACTGGAAAAAATTGCAGTAGTAAATCTCTTAAAGACCAGATCCATAATCTCTCTCATTGGAAATGTTCAGAGATCATCACTAATATTGGAGAAGGCCTTTCATGTTCTTCGAACTCTTGGGGTCACTGTTCAAATGATCTCTCAGGGTGCATCTAAGGTGAATATCTCGTTAGTTGTAAATGACAGTGAAGCAGAGCAGTGTGTCAGGGCTCTCCACAAAGCCTTTTTTGAAAGCGAACTCTTTGAATTAGAGAATGAATGCATACCTGGAAATGGTTCTGTTCCTGCATTATCTTAG

Predicted protein sequences of Glyma16g05380

Limit To All Plant Sequences

>Glyma16g05380.2   sequence type=predicted peptide   gene model=Glyma16g05380   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
YTCVMKFGGSSVANAERMREVANLILSFPEERPIIVLSAMGKTTNMLLLAGEKAVSCGVTMADSIDELSIIKDLHLRTVEELGVDRNAIETMMKELTPRTQDYLVSFGECMSTRIFAAYLNTLGIRARQYDAFEMGIITSDDFTNADILEATYPAVAKRLHSDWVCDPAIPIVTGFLGKARKSCAVTTLGRGGSDLTATTIGKALGLPEIQVWKDVDGVLTCDPNICPQAKPVPYLTFDEAAELAYFGAQVLHPQSMRPARESDIPVRVKNSYNPKAPGTLIAKTRDMSKALLTSIVLKRNVTMLDIVSTRMLGQFGFLAKVFSIFEELGISVDVVATSEVSISLTLDPSKLWSRELIQQELDYVVEELEKIAVVNLLKTRSIISLIGNVQRSSLILEKAFHVLRTLGVTVQMISQGASKVNISLVVNDSEAEQCVRALHKAFFESELFELENECIPGNGSVPALS*

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