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Report for Sequence Feature Glyma16g05370

Feature Type:gene_model
Chromosome:Gm16
Start:4680385
stop:4682450
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma16g05370
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G31410AT Annotation by Michelle Graham. TAIR10: unknown protein; Has 1719 Blast hits to 1091 proteins in 184 species: Archae - 5; Bacteria - 24; Metazoa - 559; Fungi - 169; Plants - 192; Viruses - 1; Other Eukaryotes - 769 (source: NCBI BLink). | chr2:13392220-13392819 REVERSE LENGTH=199 SoyBaseE_val: 1.00E-62ISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
UniRef100_I1MLA5UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MLA5_SOYBN SoyBaseE_val: 1.00E-137ISS
UniRef100_Q9SIC8UniRef Annotation by Michelle Graham. Most informative UniRef hit: Expressed protein n=1 Tax=Arabidopsis thaliana RepID=Q9SIC8_ARATH SoyBaseE_val: 5.00E-60ISS

Expression Patterns of Glyma16g05370
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma16g05370
ParalogEvidenceComments
Glyma19g27510 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma16g05370 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.16g049200 Wm82.a2.v1IGC As supplied by JGI

References for Glyma16g05370
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma16g05370
>Glyma16g05370.1   sequence type=CDS   gene model=Glyma16g05370   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGTGCACAATCGACTTCCGCTGTCTCGACGAGGGTTTTGGCGGCAAAACCTACAAGCGCAAGAGAGAGCAGCAGTCGCAGCCTCAGCACGACGCCGCCGCCGATGACGTCATCGACGGCGCCTCTCTGATGGACACCGACGACGCACTCCCGCCGCCGGCGAAGCGATCGGCGCTGCCATCGTCGGAGAACCCGGACAAGCCGGCGTTCGGTCATCCGAGCTACGACGGCGTGATCGCCGGGAGGGTGTCGGGGCGGAAGTGGAAGCAAGTGCGGCAGCGGAGGGCGTCGGCGGCGCAGGTTAGCCGGAAGGGGACGACGTTCGAGCAGAGGGAGAGGGAGAAGGTGATAAAGAAGGCGTACAAGGAGAGGATGATGGAGCTGAAGGAGGAGATTCGGTTGAACAAGGTCGAGAAGAGGAAGAAGAAAGAGGAGAGGGAGAAGAAAAAGCAGGAGAATATCATCAGATCTGGAACCAAGTTCCAAAAGATTACAAACCCTAATACTTTGAAGAAGATCGCCAAATCCAAGCAGAGGAAGCAGCTTAGGGTTGTTCCTGATGAATTGGTTAGGAAATAG
Predicted protein sequences of Glyma16g05370
>Glyma16g05370.1   sequence type=predicted peptide   gene model=Glyma16g05370   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MACTIDFRCLDEGFGGKTYKRKREQQSQPQHDAAADDVIDGASLMDTDDALPPPAKRSALPSSENPDKPAFGHPSYDGVIAGRVSGRKWKQVRQRRASAAQVSRKGTTFEQREREKVIKKAYKERMMELKEEIRLNKVEKRKKKEEREKKKQENIIRSGTKFQKITNPNTLKKIAKSKQRKQLRVVPDELVRK*






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