Glyma16g05350 - SoyBase

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Report for Sequence Feature Glyma16g05350

Feature Type:	gene_model
Chromosome:	Gm16
Start:	4672460
stop:	4674745
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma16g05350

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G26740	AT	Annotation by Michelle Graham. TAIR10: CCR-like \| chr3:9827868-9828461 FORWARD LENGTH=141	SoyBase	E_val: 2.00E-29	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0030003	GO-bp	Annotation by Michelle Graham. GO Biological Process: cellular cation homeostasis	SoyBase	N/A	ISS
GO:0070838	GO-bp	Annotation by Michelle Graham. GO Biological Process: divalent metal ion transport	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
PF07207	PFAM	Light regulated protein Lir1	JGI		ISS
UniRef100_I1MLA2	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1MLA2_SOYBN	SoyBase	E_val: 6.00E-95	ISS
UniRef100_Q41016	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: GA protein n=1 Tax=Pisum sativum RepID=Q41016_PEA	SoyBase	E_val: 2.00E-57	ISS

Expression Patterns of Glyma16g05350

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma16g05350

Paralog	Evidence	Comments
Glyma19g27530	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma16g05350 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.16g049000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma16g05350

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma16g05350

Limit To All Plant Sequences

>Glyma16g05350.2   sequence type=transcript   gene model=Glyma16g05350   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CTCTATTATACCTTAAACCTTATCACACTCCACTCTATTCTATAAATTGGAATCACTGCTCCTCATAAGATTAATACAACCTCAAAAAGAGTTCTTTCAAAATGCAAACAGCCTTAACCTTCGCTGCCCCCAACGTTGTGCCATTGGCACCCACAAAGAGTGTCTCCCATATTACCATCTTTCCTACCAAATTGAAAGCCCCGCGCTCCTCACCTCGTTACTCTCCGATTAGGGTTGCAACCGTGGAGCCCGACACTTCAACTGTCGACTACAACTCTGCGTTCTCAGTGTTTCCTGCAGAAGCATGCGAAACTGTAGGAGGGGAAGCCTGCATGGCGGAGATGTACCCTGAAACGAAGCTACAGCCAGAGGCTAAGACTCCACGAGTCGTTACAGAGAACGTTGAGAGAGAGTATCTTGAATACGATGATCCTAAAACGTAAGATATATAGGAATCAATTCAGATACACTTTTATTATAGAGGTTTTTAAAGTGACAACTAAATAGAAATCATCATGGACATTATTTTTATAACAATTATTATAAAATACTACAAATTTATGTGGCTGATCTCACAATAAACATGATATTCAAATATTTAAAATTCAACTTAGTAAAATTGTGGTGACAGAATGGACTTTTTACTTGAGCCTTAATTTGATTCTCTGTGCATGTTTCTCTCTATTAAAATCACTTGGGCAAGAGATACAGAGTCCTAACATGTATATTCTTATATTAAAATAGTTGGGGGCCAATCTTATATTAATATTTATTAGGGTATAAGTAATTTTTTAAAAAAATGAGGGGCCAAGGCTATAAAAATTAATAAACTTATTATAAATATCAATATCTACTGTGAATGTATTTTAATAAAAATTCTTTAATTATATGGCACTTTAGAATTAGATAAACATACTTTGTAATTAATTAATTAAAATATGTATTCCACTAGTCAAATTAATCAGAATTAAGGGTGAGGACTAGTAAAATGAATATTTAGACATCTTAAAAGTAAATAATTTTGTTATCATTTAGCTATAAAACCTTCTAAGATTGATTTCACTATTTACTCAATTTATTGACTTCACTGCTGGATATGAATTCAGAATTGTGGATAAGCATTATTATATTGTGGTTGTGGTGTGTGTTGTTCAGGGTATTTCGAGGAGAGGCTTGTGATGATCTTGGAGGAACTTTCTGTGAGACCGAGTATCAGAAGGGTGTCTACTAGAGAAATGTGAAAACCCTTTTTATTGCCATGACTACTGCGTTTTCAATGTCAACCAGTAGTAATTGTAGTGTTGAATGTACATAGGTATAAGGCTATGGATCTCAGTTTATATTGAGTTTCAGTATCGCTATAAAACTTTACAATAATTATACACTAAATTTCATAGCTTCGGCCCTCTCTTCTCTTTGACTAATTTTAAAATAAAATACAATAGGAGTACTTCATCAAGATACAATAAAAGGAGTACTCCACTAGTAATGTATTTGGGGGCATCATTTTGGTTCTCTAAGTAATTTATTAACATTTTTTTC

Coding sequences of Glyma16g05350

Limit To All Plant Sequences

>Glyma16g05350.1   sequence type=CDS   gene model=Glyma16g05350   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCAAACAGCCTTAACCTTCGCTGCCCCCAACGTTGTGCCATTGGCACCCACAAAGAGTGTCTCCCATATTACCATCTTTCCTACCAAATTGAAAGCCCCGCGCTCCTCACCTCGTTACTCTCCGATTAGGGTTGCAACCGTGGAGCCCGACACTTCAACTGTCGACTACAACTCTGCGTTCTCAGTGTTTCCTGCAGAAGCATGCGAAACTGTAGGAGGGGAAGCCTGCATGGCGGAGATGTACCCTGAAACGAAGCTACAGCCAGAGGCTAAGACTCCACGAGTCGTTACAGAGAACGTTGAGAGAGAGTATCTTGAATACGATGATCCTAAAACGGTATTTCGAGGAGAGGCTTGTGATGATCTTGGAGGAACTTTCTGTGAGACCGAGTATCAGAAGGGTGTCTACTAG

>Glyma16g05350.2   sequence type=CDS   gene model=Glyma16g05350   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCAAACAGCCTTAACCTTCGCTGCCCCCAACGTTGTGCCATTGGCACCCACAAAGAGTGTCTCCCATATTACCATCTTTCCTACCAAATTGAAAGCCCCGCGCTCCTCACCTCGTTACTCTCCGATTAGGGTTGCAACCGTGGAGCCCGACACTTCAACTGTCGACTACAACTCTGCGTTCTCAGTGTTTCCTGCAGAAGCATGCGAAACTGTAGGAGGGGAAGCCTGCATGGCGGAGATGTACCCTGAAACGAAGCTACAGCCAGAGGCTAAGACTCCACGAGTCGTTACAGAGAACGTTGAGAGAGAGTATCTTGAATACGATGATCCTAAAACGTAA

Predicted protein sequences of Glyma16g05350

Limit To All Plant Sequences

>Glyma16g05350.1   sequence type=predicted peptide   gene model=Glyma16g05350   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MQTALTFAAPNVVPLAPTKSVSHITIFPTKLKAPRSSPRYSPIRVATVEPDTSTVDYNSAFSVFPAEACETVGGEACMAEMYPETKLQPEAKTPRVVTENVEREYLEYDDPKTVFRGEACDDLGGTFCETEYQKGVY*

>Glyma16g05350.2   sequence type=predicted peptide   gene model=Glyma16g05350   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MQTALTFAAPNVVPLAPTKSVSHITIFPTKLKAPRSSPRYSPIRVATVEPDTSTVDYNSAFSVFPAEACETVGGEACMAEMYPETKLQPEAKTPRVVTENVEREYLEYDDPKT*

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