Glyma16g05340 - SoyBase

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Report for Sequence Feature Glyma16g05340

Feature Type:	gene_model
Chromosome:	Gm16
Start:	4665539
stop:	4671561
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma16g05340

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G08660	AT	Annotation by Michelle Graham. TAIR10: MALE GAMETOPHYTE DEFECTIVE 2 \| chr1:2757116-2759677 REVERSE LENGTH=474	SoyBase	E_val: 0	ISS
GO:0007020	GO-bp	Annotation by Michelle Graham. GO Biological Process: microtubule nucleation	SoyBase	N/A	ISS
GO:0008152	GO-bp	Annotation by Michelle Graham. GO Biological Process: metabolic process	SoyBase	N/A	ISS
GO:0009846	GO-bp	Annotation by Michelle Graham. GO Biological Process: pollen germination	SoyBase	N/A	ISS
GO:0009860	GO-bp	Annotation by Michelle Graham. GO Biological Process: pollen tube growth	SoyBase	N/A	ISS
GO:0005768	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: endosome	SoyBase	N/A	ISS
GO:0005794	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus	SoyBase	N/A	ISS
GO:0005802	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: trans-Golgi network	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
GO:0008373	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sialyltransferase activity	SoyBase	N/A	ISS
GO:0016757	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring glycosyl groups	SoyBase	N/A	ISS
KOG2692	KOG	Sialyltransferase	JGI		ISS
PTHR11987	Panther	ALPHA-2,8-SIALYLTRANSFERASE	JGI		ISS
PTHR11987:SF15	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF00777	PFAM	Glycosyltransferase family 29 (sialyltransferase)	JGI		ISS
UniRef100_G7KX93	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Sialyltransferase-like protein n=1 Tax=Medicago truncatula RepID=G7KX93_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1MLA1	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1MLA1_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma16g05340

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma16g05340

Paralog	Evidence	Comments
Glyma19g27546	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma16g05340 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.16g048900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma16g05340

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma16g05340

Limit To All Plant Sequences

>Glyma16g05340.1   sequence type=CDS   gene model=Glyma16g05340   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGGCAGCACAAGCAAGTGTCCTCCATTAACCGGCGACCCACCGTTCTTTATCTGGTGTGCGTCGCAGCATTGTTTTCCCTCCTCCTCTTCTACACCCAATCCTCTTTCTTCTCAGGCGCCGTGTCTTCAGATTCTTCAAGGATAGATGCCGTCTCTTCAGATCGCGATTCCGAAACAATCCACGTTTTGTCTAACTTTCAGTCCAGTGTGAAGCAATGTGTGGATAACAGGGGGCTTGGACTCACTGCACATGTTATTGACCATTGCAAATTAATCCTTAAATACCCTGAAGGTACCAACAGCACTTGGTACAATGCACAGTTTAAGAAATTTGAGCCTTTGGAGTACAATTATGATTTGTGTGAGACAATCCTATTGTGGGAACAGTATCGCAACATGACTACGGTGTTGACCAGAGAGTATCTTGATGCTCGCCCTGGTGGTTGGGTGGATTATGCTCCACAAAGGATAGCGCAGTTGGGGGCAAAGAAGTGCACTAACAAGACACTTTGTGAAGAGAACCTCGATGTGTTATTACCTGCAAAGCCCCCATTTCATCCACGGCAGTTTCGAACTTGTGCTGTTGTTGGGAATTCTGGGGACCTTCTGAAGACTAGATTTGGGAAAGAAATTGATAGTCATGATGCTGTTTTTCGAGACAATGAGGCCCCTGTTAATGAGAAATATGCCAAATATGTTGGTCTTAAGAGGGATTTCCGTCTAGTAGTAAGAGGTGCTGCTCGTAACATGGTCCCCATTCTAAACGGGTCTGACAATGAGGTACTCATAATCAAAAGTCTGACACATAGAGAAATCAATGCAGTTATAAAGACTATACCCAATCCAGTCTATCTCTTCCAAGGAATTGTACTACGTCGAGGTGCCAAAGGAACTGGAATGAAATCTATTGAGTTAGCACTCTCCATGTGTGATATTATTGATATATATGGCTTCACTGTTGATCCAGGATACACTGAATGGACAAGATACTTCTCTCAGCCTAGGAAGGGACACAACCCACTTCAAGGAAGAGCATACTACCAACTCCTAGAATGTCTTGGGGTAATTAGAATTCACTCTCCCATGAGGTCTAAGAGGATGGAAGACTGGTCAGATATACCTAGTAGACAAATGATAAGCCAAGCACATGCAGCAGCTTTGCGCTTAAAAAGGAGTCAAGCTGGTCAGGGTGGTGACTTAGGGCAGTTTGGCAATTGTAAGGTGTGGGGCAATGTCAATCCAGACAAAAGTGGACCTGTCTCGGGATCACCAGACATGAGTGATGTCAGGAGATATTCAAATTATAGTAAATGGGAAGTCATGCCTTTTGAGAGTTTGAGGAAAGAAGCACGGGATCATTATAACCAGATGCAAGGGGTCTCTGTATATAAAATGGATGGCAATAAGTTGGATGATCTAGTCTGTGTGAGACATTCCTTAAAATCCGAGGTGTAA

Predicted protein sequences of Glyma16g05340

Limit To All Plant Sequences

>Glyma16g05340.1   sequence type=predicted peptide   gene model=Glyma16g05340   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MRQHKQVSSINRRPTVLYLVCVAALFSLLLFYTQSSFFSGAVSSDSSRIDAVSSDRDSETIHVLSNFQSSVKQCVDNRGLGLTAHVIDHCKLILKYPEGTNSTWYNAQFKKFEPLEYNYDLCETILLWEQYRNMTTVLTREYLDARPGGWVDYAPQRIAQLGAKKCTNKTLCEENLDVLLPAKPPFHPRQFRTCAVVGNSGDLLKTRFGKEIDSHDAVFRDNEAPVNEKYAKYVGLKRDFRLVVRGAARNMVPILNGSDNEVLIIKSLTHREINAVIKTIPNPVYLFQGIVLRRGAKGTGMKSIELALSMCDIIDIYGFTVDPGYTEWTRYFSQPRKGHNPLQGRAYYQLLECLGVIRIHSPMRSKRMEDWSDIPSRQMISQAHAAALRLKRSQAGQGGDLGQFGNCKVWGNVNPDKSGPVSGSPDMSDVRRYSNYSKWEVMPFESLRKEARDHYNQMQGVSVYKMDGNKLDDLVCVRHSLKSEV*

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