SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G26720 | AT | Annotation by Michelle Graham. TAIR10: Glycosyl hydrolase family 38 protein | chr3:9816707-9823056 FORWARD LENGTH=1019 | SoyBase | E_val: 7.00E-49 | ISS |
| GO:0005975 | GO-bp | Annotation by Michelle Graham. GO Biological Process: carbohydrate metabolic process | SoyBase | N/A | ISS |
| GO:0006013 | GO-bp | Annotation by Michelle Graham. GO Biological Process: mannose metabolic process | SoyBase | N/A | ISS |
| GO:0007155 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cell adhesion | SoyBase | N/A | ISS |
| GO:0010048 | GO-bp | Annotation by Michelle Graham. GO Biological Process: vernalization response | SoyBase | N/A | ISS |
| GO:0010090 | GO-bp | Annotation by Michelle Graham. GO Biological Process: trichome morphogenesis | SoyBase | N/A | ISS |
| GO:0045010 | GO-bp | Annotation by Michelle Graham. GO Biological Process: actin nucleation | SoyBase | N/A | ISS |
| GO:0048765 | GO-bp | Annotation by Michelle Graham. GO Biological Process: root hair cell differentiation | SoyBase | N/A | ISS |
| GO:0071555 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cell wall organization | SoyBase | N/A | ISS |
| GO:0005576 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: extracellular region | SoyBase | N/A | ISS |
| GO:0005773 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: vacuole | SoyBase | N/A | ISS |
| GO:0005774 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: vacuolar membrane | SoyBase | N/A | ISS |
| GO:0009505 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plant-type cell wall | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0003824 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: catalytic activity | SoyBase | N/A | ISS |
| GO:0004553 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: hydrolase activity, hydrolyzing O-glycosyl compounds | SoyBase | N/A | ISS |
| GO:0004559 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: alpha-mannosidase activity | SoyBase | N/A | ISS |
| GO:0008270 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: zinc ion binding | SoyBase | N/A | ISS |
| GO:0015923 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: mannosidase activity | SoyBase | N/A | ISS |
| GO:0030246 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: carbohydrate binding | SoyBase | N/A | ISS |
| PTHR11607 | Panther | ALPHA-MANNOSIDASE | JGI | ISS | |
| PTHR11607:SF3 | Panther | LYSOSOMAL ALPHA-MANNOSIDASE (MANNOSIDASE ALPHA CLASS 2B MEMBER 1) | JGI | ISS | |
| PF07748 | PFAM | Glycosyl hydrolases family 38 C-terminal domain | JGI | ISS | |
| UniRef100_G7KX96 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Lysosomal alpha-mannosidase n=1 Tax=Medicago truncatula RepID=G7KX96_MEDTR | SoyBase | E_val: 5.00E-69 | ISS |
| UniRef100_I1N814 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1N814_SOYBN | SoyBase | E_val: 2.00E-79 | ISS |
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Glyma16g05230 not represented in the dataset |
Glyma16g05230 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma16g05230.1 sequence type=CDS gene model=Glyma16g05230 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCAAGAGCTGGTGACAATGGTGGTGTATATCATCAACTGGATGAATCTCAACGCTTATTTCTGGACGCGTGGACTACACAAATGCAACGTTTGTTGACCAAATCTTCCTTGTTTACTCTTAAACCTCTATCCCCTAGAGAATATTGCAAAGACAGTAAAATTTCTACTGATAATTCTAATGAGTTTACTATTTCTATTTCTCCTAGTGTTCAACCATTATTGCAGGAATTTAAAAATGTCCTTCATTGCCTAACAAGCCAACTTACAAAAGCAATCCCCAAGAGACTGATGATGCGAACCTTACGGGGCGGATCACTTGATACAGGCTGTAGAATTCAAGGAAAACTGTACCTTAGAATTGACCATAAAGGTGAAGGTGCTAATTGGTGTCGCACAGTTGGGCAGGAATTATATTCACCATTGCTGTTGGCCTTCACAGAACAGGAAGGAGACAATTGGTTGCATTTCATTCCATCAACATTTTCTGGCATAGATTCTTCCTACAGTTTACCTGACAACACTGCTCTTTTAACCCTCCAGGAATTTAAAAATGGAAAAGTACTCCTAAGATTGGCTCACCTTTATGAGATTGGAGAGGACAAAAATTACTCAGTAACGGCAAGTGTGGAATTGAAAAAATTGTTCCCTAACAAGAAGAAACCTGTTGATCCTATGAAGTTGGTGGTCGAACTTGCTCCAATGGAGATTCGAACATTCTTTATTGAATTTGATCCCCTCCAAACAGTTCCTGAAGCTGAAAATCATGTGGCAATGTAG
>Glyma16g05230.1 sequence type=predicted peptide gene model=Glyma16g05230 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MARAGDNGGVYHQLDESQRLFLDAWTTQMQRLLTKSSLFTLKPLSPREYCKDSKISTDNSNEFTISISPSVQPLLQEFKNVLHCLTSQLTKAIPKRLMMRTLRGGSLDTGCRIQGKLYLRIDHKGEGANWCRTVGQELYSPLLLAFTEQEGDNWLHFIPSTFSGIDSSYSLPDNTALLTLQEFKNGKVLLRLAHLYEIGEDKNYSVTASVELKKLFPNKKKPVDPMKLVVELAPMEIRTFFIEFDPLQTVPEAENHVAM*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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