Glyma16g05180 - SoyBase

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Report for Sequence Feature Glyma16g05180

Feature Type:	gene_model
Chromosome:	Gm16
Start:	4475410
stop:	4485257
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma16g05180

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G19340	AT	Annotation by Michelle Graham. TAIR10: Protein of unknown function (DUF3754) \| chr3:6701387-6704071 REVERSE LENGTH=487	SoyBase	E_val: 0	ISS
GO:0005783	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: endoplasmic reticulum	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
PF12576	PFAM	Protein of unknown function (DUF3754)	JGI		ISS
UniRef100_I1ML93	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1ML93_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q2QQX3	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Expressed protein n=1 Tax=Oryza sativa Japonica Group RepID=Q2QQX3_ORYSJ	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma16g05180

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma16g05180

Paralog	Evidence	Comments
Glyma19g27800	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma16g05180 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.16g047400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma16g05180

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma16g05180

Limit To All Plant Sequences

>Glyma16g05180.1   sequence type=CDS   gene model=Glyma16g05180   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCACATTTGCAAGAAATAGATCGAGTCAAGAATGAAGTTATACGTTTAGAGCGCGAATCTGTCATTCCCATTCTGAAGCCTAGGCTCATAATGACACTGGCCAATCTTATTGAACATAGTTCTGACCGGGCTGAGTTCTTGAAGCTCTCCAAGAGAATAGAGTACACAATTCGAGCTTGGTACCTTCTACAGTTTGAGGACTTGATGCAACTTTACTCCCTCTTTGATCCTGTACACGGGGCACAAAAGTTGGAACAGCAGAAGTTATCTTCCGAAGAAATTGATGTGCTTGAACAGAATTTCTTGACATACCTATTTCAGGTCATGGAAAAGAGCAACTTCAAGATAGTGACGGATGATGAGATTGATGTTGCACATTCAGGCCAGTATCTTCTAAATCTTCCCATAACGGTTGATGAATCTAAGCTTGACAAGATACTTCTGAAGAAATATTTTGAAGAGCATCATCATGATGACCTTCCTGATTTTTCTGATAAGTATGTTATCTTTCGGCGTGGCATTGGAATTGATCGAACAGCTGACTACTTTGTGATGGAGAAAGTGGACATGCTTATTGGACGCTTTTGGGCATATCTATTGAGAGTAACTAGGTTGGAAAAGCTTCTATCCAGAAGGTTAAAAAGGCGCAATAAGAAAGATCCAAAGAAGGACAATGAAATTAACTCTGAAGCAGATGGGCAGGACCTTTATGTTGAACGGATACGTCTTGAAAGTATGCAACTAAGTTTCCGTAATTTGCTGGGCAAGACCTTAATCCAAGAACCAACATTTGATAGGATAATTGTTGTCTACAGGGGAGCCAGAAACAAATCAAAAGAAGAACGAGGAATATATGTGAAGCATTTCAAAAACATTCCAATGGCCGATATGGAAATAGTTCTTCCAGAAAAGAAAAACCCTGGATTAACTCCAATGGATTGGGTCAAGTTTCTTGGATCAGCTGTAGTTGGTCTGGTTGCTGTAGTTAGTTCACTTGAAATGCCTTCAGCTGATTGGTGGGTCATCATTGCTGTTGTCTCCACAGTAATTGGTTATATTGCTAAGACTTACTTCACGTTCCAGCAAAACATGGCTCAGTACCAAAATTTGATTACGCAGTCAATGTATGACAAACAACTTGACAGTGGAAAGGGTACGCTTCTTCATTTGTGTGATGATGTCATTCAACAGGAAGTCAAAGAGGTTATAATTTCATTCTTTATTCTGATGGAACAGGGCAAAGCTACAAGACAGGATCTTGATCAATGGTGTGAGGAACTAATCAAAGAAGAGTTTGATGAGGAATGTAATTTTGATGTGGATGATGCTGTTGAGAAATTAGAGAAATTAGGAATTGTTACTCGGGATTCTGTTGGTCGATATCAATGTGTCGGGCTAAAACGGGCAAATGAAATCATTGGCACCACCACTGAAGAGCTTGTCCTTAAGGCAAAACAGGGAAGCATGACTTCTTGA

Predicted protein sequences of Glyma16g05180

Limit To All Plant Sequences

>Glyma16g05180.1   sequence type=predicted peptide   gene model=Glyma16g05180   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAHLQEIDRVKNEVIRLERESVIPILKPRLIMTLANLIEHSSDRAEFLKLSKRIEYTIRAWYLLQFEDLMQLYSLFDPVHGAQKLEQQKLSSEEIDVLEQNFLTYLFQVMEKSNFKIVTDDEIDVAHSGQYLLNLPITVDESKLDKILLKKYFEEHHHDDLPDFSDKYVIFRRGIGIDRTADYFVMEKVDMLIGRFWAYLLRVTRLEKLLSRRLKRRNKKDPKKDNEINSEADGQDLYVERIRLESMQLSFRNLLGKTLIQEPTFDRIIVVYRGARNKSKEERGIYVKHFKNIPMADMEIVLPEKKNPGLTPMDWVKFLGSAVVGLVAVVSSLEMPSADWWVIIAVVSTVIGYIAKTYFTFQQNMAQYQNLITQSMYDKQLDSGKGTLLHLCDDVIQQEVKEVIISFFILMEQGKATRQDLDQWCEELIKEEFDEECNFDVDDAVEKLEKLGIVTRDSVGRYQCVGLKRANEIIGTTTEELVLKAKQGSMTS*

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