Glyma16g05060 - SoyBase

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Report for Sequence Feature Glyma16g05060

Feature Type:	gene_model
Chromosome:	Gm16
Start:	4336606
stop:	4341549
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma16g05060

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G02050	AT	Annotation by Michelle Graham. TAIR10: K+ uptake transporter 3 \| chr3:350815-354135 FORWARD LENGTH=789	SoyBase	E_val: 0	ISS
GO:0006813	GO-bp	Annotation by Michelle Graham. GO Biological Process: potassium ion transport	SoyBase	N/A	ISS
GO:0016036	GO-bp	Annotation by Michelle Graham. GO Biological Process: cellular response to phosphate starvation	SoyBase	N/A	ISS
GO:0019375	GO-bp	Annotation by Michelle Graham. GO Biological Process: galactolipid biosynthetic process	SoyBase	N/A	ISS
GO:0019761	GO-bp	Annotation by Michelle Graham. GO Biological Process: glucosinolate biosynthetic process	SoyBase	N/A	ISS
GO:0071805	GO-bp	Annotation by Michelle Graham. GO Biological Process: potassium ion transmembrane transport	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
GO:0015079	GO-mf	Annotation by Michelle Graham. GO Molecular Function: potassium ion transmembrane transporter activity	SoyBase	N/A	ISS
PF02705	PFAM	K+ potassium transporter	JGI		ISS
UniRef100_B9RGU8	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Potassium transporter, putative n=1 Tax=Ricinus communis RepID=B9RGU8_RICCO	SoyBase	E_val: 0	ISS
UniRef100_I1ML79	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1ML79_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma16g05060

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma16g05060

Paralog	Evidence	Comments
Glyma19g28110	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma16g05060 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.16g046200	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma16g05060

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma16g05060

Limit To All Plant Sequences

>Glyma16g05060.1   sequence type=CDS   gene model=Glyma16g05060   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAACCGGAATCCGGAACTTCGACTTCTCGGAATCCTTCTCAGTTGTCTTGGGTGAATCTGTCTAGGAATTTATTATTAGCGTATCAAAGCTTTGGTGTGGTGTATGGAGATCTGAGCACTTCTCCTCTCTATGTCTTCACAAGCACCTTCAAGGGGAAGTTGCAGAATCACCATGACGAGGAAACTATATTCGGCACGTTTTCGTTGATTTTTTGGACCCTTACTTTGATTCCGTTGCTTAAGTATGTATTCATCCTATTGAGTGCTGATGACAACGGGGAAGGTGGAACATTCGCTCTTTATTCGCTGCTCTGTAGGCATGCCAAGTTTAATTTGCTCCCCAATCAACAAGCAGCTGATGAGGAGTTATCATCCTATAAATATGGTCCCTCTTCACAGGCTATAGCCTCTTCTCCTCTAAAGAGGTTTCTGGAGAAACATAAAAGGTTAAGAACAGCCCTGCTTGTTGTGGTATTGTTTGGTGCTTGCATGGTCATTGGTGATGGTGTGCTTACTCCAGCAATTTCGGTTCTAGCATCAGTCTCAGGACTAAAAGTTACAGAAAAAAAATTAACAGATGGTGAACTTGTCCTGCTTGCCTGTGTCATATTGGTTGGACTGTTTGCTCTCCAACATTGTGGCACACACAAAGTTGCAGTTATGTTTGCACCAATTGTAATAATCTGGCTTGTATCAATATTTTCTATTGGGGTGTATAATACAATTCATTGGAATCCAAAAATAGTCCGTGCTATATCGCCATATTATATCATCAAGTTTTTTAGCAGGACTGGTAAAGAAGGTTGGGTTTCTCTTGGAGGGATACTTCTTTGTATCACTGGAACTGAAGCTATGTTTGCGGATCTTGGTCATTTCACTGCTTCGTCAATAAGGCTTGCATTTGCGTTTGTTATATACCCGTGTTTAGTGGTACAGTATATGGGTCAAGCTGCTTTCTTGTCTAAAAATCTCGACTCTGTTGATAACGGTTTTTATGACTCAATACCTGACCCTGTGTTTTGGCCTGTTTTCATAATCGCCACCCTTGCTGCAATTGTTGGGAGTCAAGCTGTTATAACTGCAACTTTCTCCATCATCAAGCAGTGTCATGCGCTTGGTTGCTTTCCGCGAGTCAAAGTTGTACACACCTCAAAACATATATATGGACAGATCTATATCCCAGAAATCAATTGGATACTTATGATCCTAACTCTTGCAATAACCATTGGATTTCAGGACACGACCATAATTGGAAATGCTTATGGGTTGGCTTGTATGACAGTTATGTTCATAACTACATTTCTGATGACACTAGTCGCAATCTTTGTCTGGCAGAAAAGTGTCTTGATTGCTGTTGTATTTCTTTTATTCTTTTGGGTGATAGAGGGCGTATATCTATCAGCAGCTTTCATCAAAGTGCCTCAGGGAGGATGGGTACCTCTAGTCTTATCATTCATCTTCATGATTGTTATGTACGTGTGGCATTATGGAACTCGTAGGAAGTACAGCTATGATCTGCACAACAAAGTTTCATTGAAATGGTTACTGGGCTTGGGCCCAAGCCTTGGCATTGTTCGTGTACCTGGGATTGGTCTCATCTACACTGAACTGGCAACAGGCATACCTGCAATATTTTCCCATTTTGTAACAAATCTTCCTGCATTTCACCAGGTGTTGGTTTTTGTTTGTGTAAAATCAGTTCCTGTTCCATATGTTTCACCGGAAGAACGTTTCCTTATTGGGCGAGTTTGCCCCAGACCATATCGAATGTATAGGTGCATTGTCAGATATGGTTACAAGGACATTCAAAGGGATGATGGAGATTTTGAGAATCATCTTATACAGAGTATAGCAGAATTTATCCAAATGGAAGCAGTGCAACCTCAGTTCTCAAGTTCCGAAGCTTCTTCTTCACTTGATGGGAGGATGGCCGTTATAAGTTCTAGAAACTATGATTATGCTTCAAGTTTAATAGTTTCTGAGCAGGAGGATATAGGCGTTGACATATCCATCCCTAGCAGCAGATCTGCAACCCTGCAAAGTTTGCAATCGGTTTACGACGATGAAACTCCGCAAGTTAGAAGACGACGAGTAAGATTTCAGCTACCAGAAAACACTGGTATGGATCCCGATGTTAGGGAAGAGCTTTTGGATTTAATTCAAGCCAAGGAAGCTGGGGTTGCATATATAATGGGGCACTCATATGTGAAGGCAAGGAAATCATCCTCATTCTTGAAAAAGCTCGTGATTGATATTGGTTACTCATTTCTGCGCAAGAATTGCAGGGGTCCAGCTGTAGCTCTTAACATTCCTCACATTAGTCTTATTGAAGTTGGGATGATATATTATGTGTAG

Predicted protein sequences of Glyma16g05060

Limit To All Plant Sequences

>Glyma16g05060.1   sequence type=predicted peptide   gene model=Glyma16g05060   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEPESGTSTSRNPSQLSWVNLSRNLLLAYQSFGVVYGDLSTSPLYVFTSTFKGKLQNHHDEETIFGTFSLIFWTLTLIPLLKYVFILLSADDNGEGGTFALYSLLCRHAKFNLLPNQQAADEELSSYKYGPSSQAIASSPLKRFLEKHKRLRTALLVVVLFGACMVIGDGVLTPAISVLASVSGLKVTEKKLTDGELVLLACVILVGLFALQHCGTHKVAVMFAPIVIIWLVSIFSIGVYNTIHWNPKIVRAISPYYIIKFFSRTGKEGWVSLGGILLCITGTEAMFADLGHFTASSIRLAFAFVIYPCLVVQYMGQAAFLSKNLDSVDNGFYDSIPDPVFWPVFIIATLAAIVGSQAVITATFSIIKQCHALGCFPRVKVVHTSKHIYGQIYIPEINWILMILTLAITIGFQDTTIIGNAYGLACMTVMFITTFLMTLVAIFVWQKSVLIAVVFLLFFWVIEGVYLSAAFIKVPQGGWVPLVLSFIFMIVMYVWHYGTRRKYSYDLHNKVSLKWLLGLGPSLGIVRVPGIGLIYTELATGIPAIFSHFVTNLPAFHQVLVFVCVKSVPVPYVSPEERFLIGRVCPRPYRMYRCIVRYGYKDIQRDDGDFENHLIQSIAEFIQMEAVQPQFSSSEASSSLDGRMAVISSRNYDYASSLIVSEQEDIGVDISIPSSRSATLQSLQSVYDDETPQVRRRRVRFQLPENTGMDPDVREELLDLIQAKEAGVAYIMGHSYVKARKSSSFLKKLVIDIGYSFLRKNCRGPAVALNIPHISLIEVGMIYYV*

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