Glyma16g04930 - SoyBase

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Report for Sequence Feature Glyma16g04930

Feature Type:	gene_model
Chromosome:	Gm16
Start:	4230657
stop:	4232635
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma16g04930

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G12910	AT	Annotation by Michelle Graham. TAIR10: Transducin/WD40 repeat-like superfamily protein \| chr1:4395114-4396154 REVERSE LENGTH=346	SoyBase	E_val: 0	ISS
GO:0009718	GO-bp	Annotation by Michelle Graham. GO Biological Process: anthocyanin-containing compound biosynthetic process	SoyBase	N/A	ISS
GO:0043153	GO-bp	Annotation by Michelle Graham. GO Biological Process: entrainment of circadian clock by photoperiod	SoyBase	N/A	ISS
GO:0048573	GO-bp	Annotation by Michelle Graham. GO Biological Process: photoperiodism, flowering	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0000166	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleotide binding	SoyBase	N/A	ISS
GO:0044212	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transcription regulatory region DNA binding	SoyBase	N/A	ISS
KOG0290	KOG	Conserved WD40 repeat-containing protein AN11	JGI		ISS
PTHR19919	Panther	WD REPEAT CONTAINING PROTEIN	JGI		ISS
PF00400	PFAM	WD domain, G-beta repeat	JGI		ISS
UniRef100_I1ML65	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1ML65_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q19N38	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: WD repeat 2 n=1 Tax=Vitis vinifera RepID=Q19N38_VITVI	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma16g04930

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma16g04930

Paralog	Evidence	Comments
Glyma19g28250	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma16g04930 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.16g044800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma16g04930

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma16g04930

Limit To All Plant Sequences

>Glyma16g04930.1   sequence type=CDS   gene model=Glyma16g04930   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGCGCGAGCAGCGACCCCACCCAAGACGGTTCCGACGAGCAGCAGAAGCGTTCGGAGATCTACACCTACGAGGCCCCCTGGCACATCTACGCCATGAACTGGAGCGTCCGCCGCGACAAGAAGTATCGCCTCGCCATCGCCTCCCTCTTAGAGCAGTACCCTAACCGCGTGGAGATTGTCCAGCTCGACGACTCCAACGGCGAGATCCGTTCCGACCCCTCCCTCTCCTTCGAGCACCCTTACCCTCCCACCAAGGCCATCTTCATCCCCGACAAGGACTGCCACCGCCCCGATCTCCTCGCCACCTCCTCTGACTTCCTCCGCGTCTGGCACATCTCCGAATCCGCCGTCGAACTCAAGTCCCTCCTCAACGGCAACAAGAACAGCGAGTACTGTGGGCCCCTCACCTCCTTCGACTGGAACGAGGCCGAGCCCAGACGCATAGGCACCTCCAGCATCGATACCACCTGCACTATCTGGGATATCGAGAAGGAAACCGTCGATACTCAACTAATCGCTCATGATAAAGAGGTTTATGATATCGCATGGGGTGGCGTCGGAGTCTTCGCCTCCGTCTCCGCTGACGGTTCCGTTAGGGTTTTCGATCTCCGCGACAAGGAACACTCCACCATCATCTACGAGAGCTCGGAGCCGGACACGCCTCTGGTGCGGCTCGGGTGGAACAAGCAGGACCCACGCTACATGGCGACGATAATCATGGACAGTGCAAAGGTGGTGGTGTTGGATATTCGTTTTCCCACGCTCCCTGTGGTGGAGCTGCAGCGACACCAGGCGAGTGTGAACGCGATTGCGTGGGCCCCACATAGCTCGTGCCATATATGCACGGCCGGGGATGATTCGCAGGCGCTGATTTGGGACCTTTCTTCCATGGGTCAACCCGTGGAGGGTGGGCTTGACCCTATTCTTGCGTACACTGCCGGAGCGGAGATTGAGCAGCTTCAGTGGTCGTCTTCGCAGCCTGATTGGGTCGCTATTGCTTTCTCCACCAAGCTTCAGATTCTTAGGGTTTGA

Predicted protein sequences of Glyma16g04930

Limit To All Plant Sequences

>Glyma16g04930.1   sequence type=predicted peptide   gene model=Glyma16g04930   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGASSDPTQDGSDEQQKRSEIYTYEAPWHIYAMNWSVRRDKKYRLAIASLLEQYPNRVEIVQLDDSNGEIRSDPSLSFEHPYPPTKAIFIPDKDCHRPDLLATSSDFLRVWHISESAVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEKETVDTQLIAHDKEVYDIAWGGVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWVAIAFSTKLQILRV*

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