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Report for Sequence Feature Glyma16g04810

Feature Type:gene_model
Chromosome:Gm16
Start:4105542
stop:4110176
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma16g04810
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G06660AT Annotation by Michelle Graham. TAIR10: Protein of unknown function DUF106, transmembrane | chr5:2046863-2047453 FORWARD LENGTH=196 SoyBaseE_val: 5.00E-102ISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0005739GO-cc Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion SoyBaseN/AISS
GO:0016020GO-cc Annotation by Michelle Graham. GO Cellular Compartment: membrane SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
KOG3312 KOG Predicted membrane protein JGI ISS
PTHR20917Panther PNAS-RELATED JGI ISS
PF01956PFAM Integral membrane protein DUF106 JGI ISS
UniRef100_B7FGM9UniRef Annotation by Michelle Graham. Most informative UniRef hit: Transmembrane and coiled-coil domain-containing protein n=1 Tax=Medicago truncatula RepID=B7FGM9_MEDTR SoyBaseE_val: 5.00E-123ISS
UniRef100_I1ML54UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1ML54_SOYBN SoyBaseE_val: 2.00E-135ISS

Expression Patterns of Glyma16g04810
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma16g04810
ParalogEvidenceComments
Glyma19g28420 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma16g04810 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.16g043900 Wm82.a2.v1IGC As supplied by JGI

References for Glyma16g04810
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma16g04810
>Glyma16g04810.4   sequence type=CDS   gene model=Glyma16g04810   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGTATCCCTTCTCAGATTTCAAGTACTCAGATGGCCTCACTGTAGTGGGTATCTCCTTCTGCACAGCTATTGTCTGTGAGGCTATCTCATGGGTTCTTATCTATCGGACCAATTCTTACAAAAACCTTAGGTCCTCCATTGACAAAGCCTCCAAGAAACTTGAGACCATGAAGACAGACAGCAATAAAATCAACATCAAGAAGTCCAAGACCAAAAAAATTGACCGTGTTGAGACAAGCCTCAAAGAATCGAGTCGCGACTTGTCTCTCTTCAAGTTCAAGTCTGGGGGTGTGGTGGCTCTGGTTCTCTTTGTGGTCTTTGGGTTGCTGAATTCGCTCTTCGAAGGCAAGGTAGTTGCCAAATTGCCCTTCAAACCTTTTGGGCTTATTATGAAGATGAGCCATCGAGGCTTGCAGGGTAATGACCCAACTGATTGTTCCATGGCATTTCTATACTTCTTGTGTTCCATTAGCATCAGAACAAATTTGCAGAAGTTCTTGGGTTTTGCACCGCCAAGAGGTGCTGGTGCTGGTGCTGGCCTCTTTCCAATGCCTGATCCAAAGACCAGTTGA
Predicted protein sequences of Glyma16g04810
>Glyma16g04810.4   sequence type=predicted peptide   gene model=Glyma16g04810   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAYPFSDFKYSDGLTVVGISFCTAIVCEAISWVLIYRTNSYKNLRSSIDKASKKLETMKTDSNKINIKKSKTKKIDRVETSLKESSRDLSLFKFKSGGVVALVLFVVFGLLNSLFEGKVVAKLPFKPFGLIMKMSHRGLQGNDPTDCSMAFLYFLCSISIRTNLQKFLGFAPPRGAGAGAGLFPMPDPKTS*






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