Glyma16g04790 - SoyBase

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Report for Sequence Feature Glyma16g04790

Feature Type:	gene_model
Chromosome:	Gm16
Start:	4088140
stop:	4093828
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma16g04790

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G18280	AT	Annotation by Michelle Graham. TAIR10: apyrase 2 \| chr5:6050799-6054875 REVERSE LENGTH=578	SoyBase	E_val: 0	ISS
GO:0009846	GO-bp	Annotation by Michelle Graham. GO Biological Process: pollen germination	SoyBase	N/A	ISS
GO:0005768	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: endosome	SoyBase	N/A	ISS
GO:0005794	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus	SoyBase	N/A	ISS
GO:0005802	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: trans-Golgi network	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0016787	GO-mf	Annotation by Michelle Graham. GO Molecular Function: hydrolase activity	SoyBase	N/A	ISS
GO:0016887	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATPase activity	SoyBase	N/A	ISS
GO:0017110	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleoside-diphosphatase activity	SoyBase	N/A	ISS
KOG1385	KOG	Nucleoside phosphatase	JGI		ISS
PTHR11782	Panther	ADENOSINE/GUANOSINE DIPHOSPHATASE	JGI		ISS
PTHR11782:SF8	Panther	GUANOSINE-DIPHOSPHATASE	JGI		ISS
PF01150	PFAM	GDA1/CD39 (nucleoside phosphatase) family	JGI		ISS
UniRef100_I1ML51	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1ML51_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q5NT84	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Apyrase n=1 Tax=Vigna unguiculata subsp. unguiculata RepID=Q5NT84_VIGUU	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma16g04790

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma16g04790

Paralog	Evidence	Comments
Glyma19g28441	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma16g04790 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.16g043700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma16g04790

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma16g04790

Limit To All Plant Sequences

>Glyma16g04790.2   sequence type=transcript   gene model=Glyma16g04790   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATTTTACACTTAATTAATAATACTTAAATACTTAATATACACACACGAGAGGGACAACGCGGAGAGATTCAGAAACAGAACGACTCGGTATTTCTCTTCCTCTAAAGACCGAGTCCGACTCGGAGGGCGAAGAAGGCAAACTCAGTAACCTTTCCTTCCTTCACTACACGCGAGAGAGACCTCAGTGTCTGAGACGCAGGCAACGTGCATTTTCCCATACGAAGGACACCATCACGCCGTTTTCGCGTCCCCGTCGTTTCGGATCCATCGTCATCGTTTTTGTCTTCTTCTTCCATTAGTTTAGTTGAGAATCAATCCCAAGACACCGAGCTGGAGCCTCCGCCCGCCACCGCCGCTGCCTCCAACGGTCAGATCCGGTACCGATCGCCGTCCTCCGCCGAGCTCTTCGACGGCAGCAGCAACTCTCCGCCCTCGCACGCCGCCGACCAGCACTCGCCGGAGTTCGAGTCCAGCAAAATGCTGAAGCGCCCCGGCCGCCAGGAGTCCCTCGCCGACAAGATCTACCGGTTTCGCGGGACACTGCTCGTCGTCGCGATCCCGCTCCTCCTCATCACATTCGTCCTCTACGTCATGCCGTCCAGCACCTCCAACGAGTCCGTCGGAGACTACGCCCTCGTTAACCGGAAAATGTCCCCCGAAAAGAAATCCGTCGGCTCCTACGCCGTCATCTTCGACGCCGGCAGCTCCGGCAGTCGCGTCCACGTCTTCCATTTCGATCACAACCTAGATCTCGTTCACATTGGCAAAGATCTCGAACTTTTTGTCCAGAAAAAACCAGGTTTGAGTGCGTTCGCTAAGAATCCGAAACAGGCAGCGGAATCTTTGGTTTCGCTTTTGGAGGAAGCGGAGAGTGTTGTTCCTCGTGAATTGCGATCCAAGACACCGGTTCGAGTTGGGGCAACTGCGGGTTTGAGGGCTTTGGAAGGGGATGCTTCGGATAGGATTTTGCAAGCGGTAAGGGATTTGCTTAAGGATAGGAGTAGCCTTAAATCTGAGAGTGATGCAGTTACGGTGCTGGATGGAACACAAGAAGGTGCTTATCAATGGGTTACTATCAACTATCTATTGGGAAACTTGGGAAAGGATTATTCAAAGACTGTTGGGGTTGTTGATCTTGGAGGTGGATCTGTTCAAATGGCTTATGCCATCTCAGAGACAGATGCTGCCATGGCTCCAAAAGTAGTAGATGGTGGGGATCCATATCTCAAGGAGATGTTCCTGAGGGGAAGGAAATACTATCTCTATGTTCACAGTTACTTGCACTATGGTTTACTAGCTGCTCGTGCAGAGATTTTAAAGATTTCTGATGATGCTGAAAACCCTTGTGTCATATCTGGCTATGATGGTAAATATACTCCTTTCTGTCTGCCTAATGCTATTTTGATGCTAAGTTACATTTTGGCTCTTTTCTTAACCTTTCATTGGTCCACAAGGAAAAAGAGCTTTGAATTTTTTTTAATATTCTTTTTCTTCCTGCCTTATAATTCTGTTAAGTAGCTACTTTTTTTTTAATTTTTTTTCTTAGGATCCTACAACTATGGAGGAAAGTCGTTTAAGGCTTCATCCGGCTCTTCTGGTGCAAGCTTAAATGAATGCAAAAGTGTTGCTCTTAGGGCTCTCAAAGTTAATGAGTCGACATGTACTCATATGAAGTGTACTTTTGGTGGGATATGGAATGGTGGAGGGGGGGATGGACAGAAGAACCTTTTTGTTGCCTCTTTCTTCTTTGACCGGGCTGCTGAGGCTGGTTTTGCTGATCCAAACTTGCCAGTCGCGATAGTTCGTCCTGCAGATTTTGAGGATGCAGCTAAGCAAGCATGCCAAACAAAACTTGAGAATGCCAAATCCACTTTTCCTCGTGTTGATGAGGGGAACCTTCCCTATCTTTGCATGGATCTTATATACCAGTATACACTACTCGTTGATGGGTTTGGTATATATCCATGGCAAGAGATTACATTGGTGAAGAAAGTTAAATACGACGATGCCCTGGTTGAGGCAGCATGGCCCCTAGGCAGCGCCATTGAAGCTGTGTCATCTGCGTAAAATTACTGGGACTATCGCTTAGATTTGTCTGAAATCTAGGGGCACATGAGTTTCATCACCGGGATTTTGTGGTGAAATACTGTCATTCATGATGATCAGAGATTAACTTTCAGGCTGAACTGAGATTGGATATGGGTCTGTGATTCAGAAATAATGGGAGATTATAGCTTCATTATTTTTCATATGTAATTAATTCACAAACATCTAATTTGCGATTTTGGAAGATTCATTCGATTCATTAAGGGCATCTATATATGTTCTATATATGTTGTCTTCAGAGACGAACAAAATGGTGATACTAACACCATTTCATTTTTGTTTCTATTAATGGTTTCGTTCGTGATCATAGTTAATCTTTATTACTTCTCATCTTGTTGATGGCCCA

Coding sequences of Glyma16g04790

Limit To All Plant Sequences

>Glyma16g04790.1   sequence type=CDS   gene model=Glyma16g04790   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCTGAAGCGCCCCGGCCGCCAGGAGTCCCTCGCCGACAAGATCTACCGGTTTCGCGGGACACTGCTCGTCGTCGCGATCCCGCTCCTCCTCATCACATTCGTCCTCTACGTCATGCCGTCCAGCACCTCCAACGAGTCCGTCGGAGACTACGCCCTCGTTAACCGGAAAATGTCCCCCGAAAAGAAATCCGTCGGCTCCTACGCCGTCATCTTCGACGCCGGCAGCTCCGGCAGTCGCGTCCACGTCTTCCATTTCGATCACAACCTAGATCTCGTTCACATTGGCAAAGATCTCGAACTTTTTGTCCAGAAAAAACCAGGTTTGAGTGCGTTCGCTAAGAATCCGAAACAGGCAGCGGAATCTTTGGTTTCGCTTTTGGAGGAAGCGGAGAGTGTTGTTCCTCGTGAATTGCGATCCAAGACACCGGTTCGAGTTGGGGCAACTGCGGGTTTGAGGGCTTTGGAAGGGGATGCTTCGGATAGGATTTTGCAAGCGGTAAGGGATTTGCTTAAGGATAGGAGTAGCCTTAAATCTGAGAGTGATGCAGTTACGGTGCTGGATGGAACACAAGAAGGTGCTTATCAATGGGTTACTATCAACTATCTATTGGGAAACTTGGGAAAGGATTATTCAAAGACTGTTGGGGTTGTTGATCTTGGAGGTGGATCTGTTCAAATGGCTTATGCCATCTCAGAGACAGATGCTGCCATGGCTCCAAAAGTAGTAGATGGTGGGGATCCATATCTCAAGGAGATGTTCCTGAGGGGAAGGAAATACTATCTCTATGTTCACAGTTACTTGCACTATGGTTTACTAGCTGCTCGTGCAGAGATTTTAAAGATTTCTGATGATGCTGAAAACCCTTGTGTCATATCTGGCTATGATGGATCCTACAACTATGGAGGAAAGTCGTTTAAGGCTTCATCCGGCTCTTCTGGTGCAAGCTTAAATGAATGCAAAAGTGTTGCTCTTAGGGCTCTCAAAGTTAATGAGTCGACATGTACTCATATGAAGTGTACTTTTGGTGGGATATGGAATGGTGGAGGGGGGGATGGACAGAAGAACCTTTTTGTTGCCTCTTTCTTCTTTGACCGGGCTGCTGAGGCTGGTTTTGCTGATCCAAACTTGCCAGTCGCGATAGTTCGTCCTGCAGATTTTGAGGATGCAGCTAAGCAAGCATGCCAAACAAAACTTGAGAATGCCAAATCCACTTTTCCTCGTGTTGATGAGGGGAACCTTCCCTATCTTTGCATGGATCTTATATACCAGTATACACTACTCGTTGATGGGTTTGGTATATATCCATGGCAAGAGATTACATTGGTGAAGAAAGTTAAATACGACGATGCCCTGGTTGAGGCAGCATGGCCCCTAGGCAGCGCCATTGAAGCTGTGTCATCTGCGTAA

>Glyma16g04790.2   sequence type=CDS   gene model=Glyma16g04790   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCTGAAGCGCCCCGGCCGCCAGGAGTCCCTCGCCGACAAGATCTACCGGTTTCGCGGGACACTGCTCGTCGTCGCGATCCCGCTCCTCCTCATCACATTCGTCCTCTACGTCATGCCGTCCAGCACCTCCAACGAGTCCGTCGGAGACTACGCCCTCGTTAACCGGAAAATGTCCCCCGAAAAGAAATCCGTCGGCTCCTACGCCGTCATCTTCGACGCCGGCAGCTCCGGCAGTCGCGTCCACGTCTTCCATTTCGATCACAACCTAGATCTCGTTCACATTGGCAAAGATCTCGAACTTTTTGTCCAGAAAAAACCAGGTTTGAGTGCGTTCGCTAAGAATCCGAAACAGGCAGCGGAATCTTTGGTTTCGCTTTTGGAGGAAGCGGAGAGTGTTGTTCCTCGTGAATTGCGATCCAAGACACCGGTTCGAGTTGGGGCAACTGCGGGTTTGAGGGCTTTGGAAGGGGATGCTTCGGATAGGATTTTGCAAGCGGTAAGGGATTTGCTTAAGGATAGGAGTAGCCTTAAATCTGAGAGTGATGCAGTTACGGTGCTGGATGGAACACAAGAAGGTGCTTATCAATGGGTTACTATCAACTATCTATTGGGAAACTTGGGAAAGGATTATTCAAAGACTGTTGGGGTTGTTGATCTTGGAGGTGGATCTGTTCAAATGGCTTATGCCATCTCAGAGACAGATGCTGCCATGGCTCCAAAAGTAGTAGATGGTGGGGATCCATATCTCAAGGAGATGTTCCTGAGGGGAAGGAAATACTATCTCTATGTTCACAGTTACTTGCACTATGGTTTACTAGCTGCTCGTGCAGAGATTTTAAAGATTTCTGATGATGCTGAAAACCCTTGTGTCATATCTGGCTATGATGGTAAATATACTCCTTTCTGTCTGCCTAATGCTATTTTGATGCTAAGTTACATTTTGGCTCTTTTCTTAACCTTTCATTGGTCCACAAGGAAAAAGAGCTTTGAATTTTTTTTAATATTCTTTTTCTTCCTGCCTTATAATTCTGTTAAGTAG

Predicted protein sequences of Glyma16g04790

Limit To All Plant Sequences

>Glyma16g04790.1   sequence type=predicted peptide   gene model=Glyma16g04790   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLKRPGRQESLADKIYRFRGTLLVVAIPLLLITFVLYVMPSSTSNESVGDYALVNRKMSPEKKSVGSYAVIFDAGSSGSRVHVFHFDHNLDLVHIGKDLELFVQKKPGLSAFAKNPKQAAESLVSLLEEAESVVPRELRSKTPVRVGATAGLRALEGDASDRILQAVRDLLKDRSSLKSESDAVTVLDGTQEGAYQWVTINYLLGNLGKDYSKTVGVVDLGGGSVQMAYAISETDAAMAPKVVDGGDPYLKEMFLRGRKYYLYVHSYLHYGLLAARAEILKISDDAENPCVISGYDGSYNYGGKSFKASSGSSGASLNECKSVALRALKVNESTCTHMKCTFGGIWNGGGGDGQKNLFVASFFFDRAAEAGFADPNLPVAIVRPADFEDAAKQACQTKLENAKSTFPRVDEGNLPYLCMDLIYQYTLLVDGFGIYPWQEITLVKKVKYDDALVEAAWPLGSAIEAVSSA*

>Glyma16g04790.2   sequence type=predicted peptide   gene model=Glyma16g04790   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLKRPGRQESLADKIYRFRGTLLVVAIPLLLITFVLYVMPSSTSNESVGDYALVNRKMSPEKKSVGSYAVIFDAGSSGSRVHVFHFDHNLDLVHIGKDLELFVQKKPGLSAFAKNPKQAAESLVSLLEEAESVVPRELRSKTPVRVGATAGLRALEGDASDRILQAVRDLLKDRSSLKSESDAVTVLDGTQEGAYQWVTINYLLGNLGKDYSKTVGVVDLGGGSVQMAYAISETDAAMAPKVVDGGDPYLKEMFLRGRKYYLYVHSYLHYGLLAARAEILKISDDAENPCVISGYDGKYTPFCLPNAILMLSYILALFLTFHWSTRKKSFEFFLIFFFFLPYNSVK*

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