SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G18280 | AT | Annotation by Michelle Graham. TAIR10: apyrase 2 | chr5:6050799-6054875 REVERSE LENGTH=578 | SoyBase | E_val: 2.00E-166 | ISS |
| GO:0009846 | GO-bp | Annotation by Michelle Graham. GO Biological Process: pollen germination | SoyBase | N/A | ISS |
| GO:0005768 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: endosome | SoyBase | N/A | ISS |
| GO:0005794 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus | SoyBase | N/A | ISS |
| GO:0005802 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: trans-Golgi network | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0016787 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: hydrolase activity | SoyBase | N/A | ISS |
| GO:0016887 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ATPase activity | SoyBase | N/A | ISS |
| GO:0017110 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: nucleoside-diphosphatase activity | SoyBase | N/A | ISS |
| KOG1385 | KOG | Nucleoside phosphatase | JGI | ISS | |
| PTHR11782 | Panther | ADENOSINE/GUANOSINE DIPHOSPHATASE | JGI | ISS | |
| PTHR11782:SF8 | Panther | GUANOSINE-DIPHOSPHATASE | JGI | ISS | |
| PF01150 | PFAM | GDA1/CD39 (nucleoside phosphatase) family | JGI | ISS | |
| UniRef100_I1ML44 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1ML44_SOYBN | SoyBase | E_val: 0 | ISS |
| UniRef100_Q9FVC2 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Apyrase GS52 n=1 Tax=Glycine soja RepID=Q9FVC2_GLYSO | SoyBase | E_val: 0 | ISS |
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Glyma16g04750 not represented in the dataset |
Glyma16g04750 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.16g043300 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma16g04750.1 sequence type=CDS gene model=Glyma16g04750 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGTACTTGTGCTATGGTCAAGAGGGACTAAGAACATGGACTTCCTAACCCTCTTCACTCTTCTACTCTTGTTATTCATTCATACAGCACTCTCTTCTACCCAATATCATGATGGGAACATCTTACTCACTCATCGTAAGATCTTCCCCAAACAGGAAGCTATCACCTCGTACGCTGTCATCTTTGATGCTGGTAGCACTGGTAGCCGTGTGCATGTCTTCCATTTCGACCAGAACTTGGATCTCCTTCGTATTGGCAACGAACTCGAGTTTTATGATAAGGTAACACCCGGTTTGAGTGCATACGCAGATAATCCTCAACAAGCTGCAGAATCTCTTATCCCACTTTTAGAGGAAGCTGAAAGTGTTGTCCCTGAGGACCTGTACCCTACTACACCCGTTAAGCTTGGGGCGACTGCAGGTTTAAGGCTTTTGGAAGGGGATGCTTCTGAAAGGATATTGCAAGCGGTTAGGGATTTGCTCAAGAACAGAAGTACCCTGAACACTCAACCAGATGCAGTAGCTATTATTGATGGAACCCAAGAAGGTTCTTATCTATGGGTGACAATTAATTATTTATTGGGGAAGTTGGGAAAAAGGTTTTCAAAGACAGTAGGAGTAGTTGATCTTGGAGGTGGATCAGTTCAAATGGCATATGCCATCTCAAGGAACACAGCAAAAAATGCTCCAAAACCACCAGATGGAGAGGAACCTTACATAAAGAAGCTTGTACTCAAGGGAAAGGAATATGACCTCTATGTTCACAGTTATTTGCATTACGGTAGAGAAGCATCTCGTGCCGAGATTTTGAAGGTCACTGATGGCTCCGCTAACCCTTGTATTTTAGCTGGCTTCGATGGGACCTACACATATTCAGGAGCAGACTATAAGGCCTTCGCTCCCATTTCTGGCTCCAGCTACGATGAATGTAGAGAGGTTGTTCTTCAAGCTCTCAAATTGAATGAGTCATGCCCCCATCAAAATTGCACATTTGGTGGTATATGGGATGGTGGAAGGGGAAGTGGACAGAAAATTCTTTTCGGCACTTCATCTTTCTATTATCTGCCTACAGAGATTGGTATCATTGATCTAAATAAACCCAACTCCAAAATTCATCCTGTTGATCTTGAGATTGAAGCTAAACGAGCTTGTGAAACAAAATTGGAGGATGCCAAGTCCACCTATCCAAACCTTGCTGAGGATAGACTTCCATATGTATGCTTGGATATTGCATACCAGTATGCATTGTACACCGATGGATTTGGCCTTGATCCATGGCAAGAGATTACAGTGGCAAATGAAATAGAATATCAGGATGCTCTTGTGGAAGCTGCATGGCCTTTAGGCACTGCCATAGAAGCCATATCGTCATTGCCTAAATTTGATCGATTAATGTATTTTATTTAA
>Glyma16g04750.1 sequence type=predicted peptide gene model=Glyma16g04750 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MVLVLWSRGTKNMDFLTLFTLLLLLFIHTALSSTQYHDGNILLTHRKIFPKQEAITSYAVIFDAGSTGSRVHVFHFDQNLDLLRIGNELEFYDKVTPGLSAYADNPQQAAESLIPLLEEAESVVPEDLYPTTPVKLGATAGLRLLEGDASERILQAVRDLLKNRSTLNTQPDAVAIIDGTQEGSYLWVTINYLLGKLGKRFSKTVGVVDLGGGSVQMAYAISRNTAKNAPKPPDGEEPYIKKLVLKGKEYDLYVHSYLHYGREASRAEILKVTDGSANPCILAGFDGTYTYSGADYKAFAPISGSSYDECREVVLQALKLNESCPHQNCTFGGIWDGGRGSGQKILFGTSSFYYLPTEIGIIDLNKPNSKIHPVDLEIEAKRACETKLEDAKSTYPNLAEDRLPYVCLDIAYQYALYTDGFGLDPWQEITVANEIEYQDALVEAAWPLGTAIEAISSLPKFDRLMYFI*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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