Glyma16g04610 - SoyBase

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Report for Sequence Feature Glyma16g04610

Feature Type:	gene_model
Chromosome:	Gm16
Start:	3893224
stop:	3896390
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma16g04610

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G54385	AT	Annotation by Michelle Graham. TAIR10: ARM repeat superfamily protein \| chr1:20301289-20303048 REVERSE LENGTH=560	SoyBase	E_val: 0	ISS
GO:0000245	GO-bp	Annotation by Michelle Graham. GO Biological Process: spliceosomal complex assembly	SoyBase	N/A	ISS
GO:0000398	GO-bp	Annotation by Michelle Graham. GO Biological Process: mRNA splicing, via spliceosome	SoyBase	N/A	ISS
GO:0005575	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cellular component	SoyBase	N/A	ISS
PTHR12794	Panther	GEMIN2	JGI		ISS
UniRef100_Q5XVI1	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: ARM repeat-containing protein n=1 Tax=Arabidopsis thaliana RepID=Q5XVI1_ARATH	SoyBase	E_val: 0	ISS
UniRef100_UPI000233BD5E	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233BD5E related cluster n=1 Tax=unknown RepID=UPI000233BD5E	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma16g04610

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma16g04610

Paralog	Evidence	Comments
Glyma19g28690	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma16g04610 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.16g041800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma16g04610

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma16g04610

Limit To All Plant Sequences

>Glyma16g04610.2   sequence type=CDS   gene model=Glyma16g04610   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGTAGGAGTCTAAGCCCTTTGGTGAGGCAAGAGCTGGCAAATCTTGAGAAAGATGAAGATAGCCGCAAATCCGCCATGAAGGCGTTGAAATCTTATGTGAAAGATTTGGATTTAGAGGCCATTCCTTTCTTTCTCGCAAAAGTTTCTGAGAGCAAAGAAAATTGTTCAGGGGAGTTCACAATTTCAATCTTTGAAGTTCTTGCTAGGGTTCACGGTGTCAAAATTGTTCCTTTGATAGACAACATCATGAGAACCATAGTAAAGACTTTGGCTTCAAGTGCAGGGTCCTTCCCTCTCCAACAGGCTTGCTCAAAGGTGGTTCCTGCAGTTGCAAGATATGGAATTGACCCCTCAACCCCAGAAGACAAAAGGAGGCACATAATTTGGTCCCTTTGCACGCCTCTTTCCAATTCTCTCTCGAGTTCTCAGGAGAGCCTTACTTCGGGTGCTGCCCTTTGCTTGAAGGCTCTGGTGGATTCTGATAATTGGAGGTTTGCTTCAGATGAATTGGTCAATCGGGTTTGCCAGAATGTTGCTGCGGCATTAGATGGAAAGTCTGGTCAAACCAACTCCCATCTTGGTCTGGTTATGTCGTTGGCCAGGCGCAATGCGTTGATCATTGAAGCGTATGCAAGGTTGCTCATACAATCTGGAATAAGAATACTGAATGCTGGCCTTGTGGAGGGGAATTCTCAGAAAAGGCTTTCATCAATTCAGATGATCAACTACTTGATGAGAAGTTTGGACTCCAGAAGCATATTCTCAGAGATTGAATTGATAATTGAGGAGATGGACAAGTGCCAATCTGATAAAATGGCATTTGTGCAAGGTGCAGCACTTGAGGCTTTGCAAACTGCCAAGAGAATTGCAAGTGATAAAAAGCCAAGATATGCAAAAAGTCCGGCTTCAGTGACAGGATCAAATTTTAGTAGGAGAGAGGAAGACTATATGGAGGGAGAGAATACTTCTTCTGGTGATGGAGAACATACTCCTTCTTCTCTTACACCTGAATCGCGGACATTTGACTTTTTCCCTGGATATGAATATGTTGATTCTCCTATTTCAAGCAACTTTGGACGAAGAAGTGTGACTAGGAAGCTTTGGAGTAATGAAAATGGAGGAGTTGATGTGTCTCTAAAGGATGGTTTGTTTTCACAAATAGGAAAAGAAAGTGCTTTGTTAGAGCATTCATTGATTCCAGAGTTTTCTGATGGAGAGGGAGACTATACAGAGGAGTTTGCTGGTTTCATGGGCAGAAATACCAGCCATGGAGTGTCCAAAAGTACCACCACAAGTCCACTAAGGTCACGCACTCAGGCAACTGTTGACAGCATAAAAATCTTTGAGACCCCTAGGAAGCTCATCCACTCTCTTCAAGATTCAAGTGATCTGTCTTTGGGTTGCTCTAAGAAGGAGCAGAATGGAAGGTATAGGAGTCTATCCTCAGACGACAACATGGAGTGGAGTCCATCTTGTAAGTATAACCAAAACGGTTTCTCAGATGACATGAACAAGTGTGATAGCGAAGTAATCGAAGGTTGTGCTGAGGTTGAGTTTCAAGGTGGCTCAGAGTCAGTCTCATCAACAAATGACAACAACATTCTTGTAGATGTCGAAAAGCAGATGCATACCAAAGTGGTTCCTGAAAATAGAAATGCCAAGACTAAATACAAATTGGTTTGTGGTCTTTCATGCGTTCTACTTGCAGTGGCTACTCCATTGCTTTGGATCAATAATCAAGATGAAGGCCATTATCTTGTCCCAACATAA

Predicted protein sequences of Glyma16g04610

Limit To All Plant Sequences

>Glyma16g04610.2   sequence type=predicted peptide   gene model=Glyma16g04610   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGRSLSPLVRQELANLEKDEDSRKSAMKALKSYVKDLDLEAIPFFLAKVSESKENCSGEFTISIFEVLARVHGVKIVPLIDNIMRTIVKTLASSAGSFPLQQACSKVVPAVARYGIDPSTPEDKRRHIIWSLCTPLSNSLSSSQESLTSGAALCLKALVDSDNWRFASDELVNRVCQNVAAALDGKSGQTNSHLGLVMSLARRNALIIEAYARLLIQSGIRILNAGLVEGNSQKRLSSIQMINYLMRSLDSRSIFSEIELIIEEMDKCQSDKMAFVQGAALEALQTAKRIASDKKPRYAKSPASVTGSNFSRREEDYMEGENTSSGDGEHTPSSLTPESRTFDFFPGYEYVDSPISSNFGRRSVTRKLWSNENGGVDVSLKDGLFSQIGKESALLEHSLIPEFSDGEGDYTEEFAGFMGRNTSHGVSKSTTTSPLRSRTQATVDSIKIFETPRKLIHSLQDSSDLSLGCSKKEQNGRYRSLSSDDNMEWSPSCKYNQNGFSDDMNKCDSEVIEGCAEVEFQGGSESVSSTNDNNILVDVEKQMHTKVVPENRNAKTKYKLVCGLSCVLLAVATPLLWINNQDEGHYLVPT*

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