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Report for Sequence Feature Glyma16g04440

Feature Type:gene_model
Chromosome:Gm16
Start:3766740
stop:3768725
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma16g04440
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G18130AT Annotation by Michelle Graham. TAIR10: unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G03870.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr5:5995634-5997165 FORWARD LENGTH=280 SoyBaseE_val: 9.00E-28ISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0009617GO-bp Annotation by Michelle Graham. GO Biological Process: response to bacterium SoyBaseN/AISS
GO:0045087GO-bp Annotation by Michelle Graham. GO Biological Process: innate immune response SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
UniRef100_I1ML13UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1ML13_SOYBN SoyBaseE_val: 0ISS
UniRef100_Q9FK57UniRef Annotation by Michelle Graham. Most informative UniRef hit: Gb|AAF00631.1 n=1 Tax=Arabidopsis thaliana RepID=Q9FK57_ARATH SoyBaseE_val: 4.00E-25ISS

Expression Patterns of Glyma16g04440
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma16g04440
ParalogEvidenceComments
Glyma19g28970 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma16g04440 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.16g040300 Wm82.a2.v1IGC As supplied by JGI

References for Glyma16g04440
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma16g04440
>Glyma16g04440.1   sequence type=CDS   gene model=Glyma16g04440   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGACACTACTGACTGGGAAGTCCTTTCTTATGATGGCCTTTCTGATTTTGATGACTATGACTTGTGCACCTCACCAAAATTCATGAAAGCCTCTGAAGCATCAAGGAATTTTCATCCAAGGGTGCCTAAACAGATTCTTCATATTCCAATTCAATTGGAACCGAGAATTGGGAAGGCCCCAGATGAAGGGTCAATGGAAGAGAACACTAAGGATCATCATCGTGTTGAGGTCCCTCTTGTTCCATCATCACCAACTACCATTGAGAATATCAAAGGAGGGATTTTGGAGGCTGATTATGACACTGTTGCACACCTTTTCTCCAAGATCAAGGAAATTGAGTCTCCAAAGTCCATTGATAGAGGATTGTTGTTCCCTGATATAGGTGCTTTGAAATTTGAGGACAAAGGTGGTGATCAGGCACAAGAGATCATCATGGCCTCTCCAAGAATGAAGATTGAGAAAGAAATTGATACTATTATGGACTGTGGCAAAGAAGTGGAGGACTCTAGTGGTGGTTTTAACTTTTGGAAGTGGAGCTTGAATGGTGTTGGGGCTATATGTTCTTTTGGGTTTGCTGCTGCCACAATCTGTGTCCTAATTCTTGGAAGCCAGCAAAGGAACAACAAAATCCAGCAGGATCAGAAGATTTGGTTCCAGATCTACACTGATGACAAGAGGATTAAGCAAGTGGTGCATGCAACCAAATTGAATGAAGCAATGGCAGCAGTGAGTGGTGTTCCTCTGAGTAGAGCTCGCATAACCTGTGGTGGTTACTATGATGGCCTTTGA
Predicted protein sequences of Glyma16g04440
>Glyma16g04440.1   sequence type=predicted peptide   gene model=Glyma16g04440   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDTTDWEVLSYDGLSDFDDYDLCTSPKFMKASEASRNFHPRVPKQILHIPIQLEPRIGKAPDEGSMEENTKDHHRVEVPLVPSSPTTIENIKGGILEADYDTVAHLFSKIKEIESPKSIDRGLLFPDIGALKFEDKGGDQAQEIIMASPRMKIEKEIDTIMDCGKEVEDSSGGFNFWKWSLNGVGAICSFGFAAATICVLILGSQQRNNKIQQDQKIWFQIYTDDKRIKQVVHATKLNEAMAAVSGVPLSRARITCGGYYDGL*






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