Glyma16g04430 - SoyBase

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Report for Sequence Feature Glyma16g04430

Feature Type:	gene_model
Chromosome:	Gm16
Start:	3744219
stop:	3749732
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma16g04430

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G03860	AT	Annotation by Michelle Graham. TAIR10: APR-like 5 \| chr3:992465-994315 FORWARD LENGTH=300	SoyBase	E_val: 5.00E-87	ISS
GO:0045454	GO-bp	Annotation by Michelle Graham. GO Biological Process: cell redox homeostasis	SoyBase	N/A	ISS
KOG2640	KOG	Thioredoxin	JGI		ISS
PF00085	PFAM	Thioredoxin	JGI		ISS
UniRef100_G7KPL3	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Thioredoxin domain-containing protein n=1 Tax=Medicago truncatula RepID=G7KPL3_MEDTR	SoyBase	E_val: 5.00E-120	ISS
UniRef100_I1ML12	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1ML12_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma16g04430

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma16g04430

Paralog	Evidence	Comments
Glyma19g28980	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma16g04430 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.16g040200	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma16g04430

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma16g04430

Limit To All Plant Sequences

>Glyma16g04430.1   sequence type=CDS   gene model=Glyma16g04430   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCCACTTCACTTCTTCTACTTCTCTTCATCACTTGTTTCTCTCTTCTACCATCTTCTTATAGTTATTCCTCTCCTTTTCCACCTTCTGCTTCCTTTCTCTATGAACTTCAATCTCAGTGCTCCCTTGCCACCTCCCCTGACCCTCCTCTTCAGGTGGATGGGAATTTCATAGAAGGGGTTTTGTCTGGCAGAAAGAGGGTTGGATACATTTCTATACTCTTCTATGCTTCCTGGTGTCCTTTATCATGCAGAATGCTTCCTGAATTTGAGATTCTTAGTTCCATGTTTCCTCAAGTACAACATGTAGCACTTGAGCAATCATCTGCTTTGCCCAGCTTATATTCAAAATATGGAATCCATAGCTTACCTGCAATCTTACTGGTGAATCAGACATCTAGGGTGAGATATCATGGTCCAAAAATTCTTAACTTCCTTGTAGAATTTTATGAGAGAAACACAGGATTAGAAGCCAAGGACAATGCTGTTGTTGGTCAACTGAGCAATTTGATGAGTGATGAACATTCAACTATGAAGGGCTTCTCCCTCAAAGAAATATTTAACAGGGAACCTTACTTGGCATTATCTATATTGTTTTTCTGTTTAAGGATTATTCTATTTGTATTGCCCACGATTATGTCACGTCTCAAAGAATTCTGGACTTCCTATGCTTCTCATTTGAACATGCAAATATTTGGCGAGGTGATGGAACGTGTTCTTAATGTAATTGATGTCAAGAGGATTTGGACCAAGCTAAGACTATACAAGACCAGGAACTTTCATGAAAGGGTGAGGAGTGCCCGGGTTTGGGCATCATCTCTGGCTTCTGTTTCCCTTGGTGACTCATCAGCTAGGTGA

Predicted protein sequences of Glyma16g04430

Limit To All Plant Sequences

>Glyma16g04430.1   sequence type=predicted peptide   gene model=Glyma16g04430   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MATSLLLLLFITCFSLLPSSYSYSSPFPPSASFLYELQSQCSLATSPDPPLQVDGNFIEGVLSGRKRVGYISILFYASWCPLSCRMLPEFEILSSMFPQVQHVALEQSSALPSLYSKYGIHSLPAILLVNQTSRVRYHGPKILNFLVEFYERNTGLEAKDNAVVGQLSNLMSDEHSTMKGFSLKEIFNREPYLALSILFFCLRIILFVLPTIMSRLKEFWTSYASHLNMQIFGEVMERVLNVIDVKRIWTKLRLYKTRNFHERVRSARVWASSLASVSLGDSSAR*

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