Report for Sequence Feature Glyma16g04380
Feature Type: gene_model
Chromosome: Gm16
Start: 3705833
stop: 3708868
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma16g04380
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
UniRef100_I1ML06 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1ML06_SOYBN
SoyBase E_val: 7.00E-68 ISS
Expression Patterns of Glyma16g04380
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma16g04380
Paralog Evidence Comments
Glyma19g29031 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma16g04380 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.16g039800 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma16g04380
Coding sequences of Glyma16g04380
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma16g04380.2 sequence type=CDS gene model=Glyma16g04380 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGACGCTCTCACTCGAGACCCCGACAAAACTTTTCCTTTTCGTTGAAATGAAAACCGCTTCATCGATATTTCCTTGTATACGCGTCAATGCGTGTGTAACCGACACGTCACTAAATGTCGCACTCAATGGATCCGGAAAATGCTATAAATACCTCAGACACAAGCCAGTAGTACTAAGTCACCAACGTTCCAGTAGCTGCTCCTCAGTTTCTCCAAACCCAAACTTTCACGACAGGGACCTGTCAGATTTAGTTAAGGTTTTTGCATCATCACTGTGTGAAGATAATATAGATATGGAAATCTCCCATGACATCAAGATCAAGGATGACAAGCTAGGTGATGTAAAGGAAGAGAAGATTAAGGCAGAAGCGGAACTGAAGCATAAATCAGTTGAGAAAGAGCATACAAAAAGTAAGGAAGAGAAGATTAAGGTAGAAGCGGAACTGAAGAATAAATCAGTTGAGAAAGAGCATACAAAAAGTAAGGAAGAGAAGAAACATAAAGATGAAGATAAATCAAAGAAAAAGAAGAAAGAGAAGGTGGAAGAGGAAGATGAAGAGAGAGAGAAAAAAGAAAAAGATTTGAAAGCTAAAGGGGACGATGGTGAAGAGAAAAAGGAGAAGGATAAGAAGGAGAAGAAGAAAAAAGAAAACAAAGACAAGGGTGACAAAACTGATGTAGAGAAGGTCAAGGGGAAAGAAAATGATGGGGAGGATGATGAAGAGAAGAAGGAAAAGAAGAAAAAGGAGAAGAAAGACAAGGATGGCAAAACTGATGCAGAGAAGATCAAGAAGAAAGAAGATGATGGGAAGGATGATGAAGAGAAGAAGGAAAAGAAGAAAAAGTATGACAAAATTGATGCAGAGAAAGTCAAGGGGAAAGAAGATGATGGGAAAGATGAAGGGAATAAGGAAAAGAAGGACAAAGAAAAAGGAGACGGTGATGGTGAAGAGAAGAAGGAAAAGAAAGATAAAGAGAAGGAGAAGAAAAAGGAAAAGAAGGATAAAGATGAAGAAACAGACACATTAAAGGAAAAGGGAAAAAATGATGAAGGTGAGGATGATGAAGGAAATAAGAAAAAGAAAAAGGATAAGAAGGAGAAAGAGAAGGATCACAAAAAGGAAAAGAAGGATAAAGAGGAGGGTGAGAAAGAGGATAGCAAGGTTGAAGTTTCTGTTAGGGATATTGATATAGAAGAAATAAAAAAAGAAGGTGAAAAAGAAGATAAAGGAAAGGATGGTGGGAAGGAAGTGAAAGAGAAGAAGAAAAAAGAAGACAAAGACAAGAAGGAGAAGAAGAAAAAAGTTACTGGAAAGGACAAGACCAAGGATCTTAGCACTCTGAAGCAGAAGCTTGAAAAAATTAACGGAAAAATACAACCACTCCTTGAAAAGAAGGCTGATATAGAAAGGCAGATTAAAGAAGTTGAAGCTGAAGGTCATGTGGTCAATGAGGAGAACAAGAATGAGGTACAGTAG
Predicted protein sequences of Glyma16g04380
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma16g04380.2 sequence type=predicted peptide gene model=Glyma16g04380 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MTLSLETPTKLFLFVEMKTASSIFPCIRVNACVTDTSLNVALNGSGKCYKYLRHKPVVLSHQRSSSCSSVSPNPNFHDRDLSDLVKVFASSLCEDNIDMEISHDIKIKDDKLGDVKEEKIKAEAELKHKSVEKEHTKSKEEKIKVEAELKNKSVEKEHTKSKEEKKHKDEDKSKKKKKEKVEEEDEEREKKEKDLKAKGDDGEEKKEKDKKEKKKKENKDKGDKTDVEKVKGKENDGEDDEEKKEKKKKEKKDKDGKTDAEKIKKKEDDGKDDEEKKEKKKKYDKIDAEKVKGKEDDGKDEGNKEKKDKEKGDGDGEEKKEKKDKEKEKKKEKKDKDEETDTLKEKGKNDEGEDDEGNKKKKKDKKEKEKDHKKEKKDKEEGEKEDSKVEVSVRDIDIEEIKKEGEKEDKGKDGGKEVKEKKKKEDKDKKEKKKKVTGKDKTKDLSTLKQKLEKINGKIQPLLEKKADIERQIKEVEAEGHVVNEENKNEVQ*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
