Glyma16g04330 - SoyBase

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Report for Sequence Feature Glyma16g04330

Feature Type:	gene_model
Chromosome:	Gm16
Start:	3669366
stop:	3673933
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma16g04330

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G04885	AT	Annotation by Michelle Graham. TAIR10: Glycosyl hydrolase family protein \| chr5:1423369-1426628 FORWARD LENGTH=665	SoyBase	E_val: 0	ISS
GO:0005975	GO-bp	Annotation by Michelle Graham. GO Biological Process: carbohydrate metabolic process	SoyBase	N/A	ISS
GO:0005576	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: extracellular region	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0031225	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: anchored to membrane	SoyBase	N/A	ISS
GO:0004553	GO-mf	Annotation by Michelle Graham. GO Molecular Function: hydrolase activity, hydrolyzing O-glycosyl compounds	SoyBase	N/A	ISS
PF00933	PFAM	Glycosyl hydrolase family 3 N terminal domain	JGI		ISS
PF01915	PFAM	Glycosyl hydrolase family 3 C terminal domain	JGI		ISS
UniRef100_Q2HVM0	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Glycoside hydrolase, family 3, N-terminal; Glycoside hydrolase, family 3, C-terminal n=1 Tax=Medicago truncatula RepID=Q2HVM0_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_UPI000233BD5B	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233BD5B related cluster n=1 Tax=unknown RepID=UPI000233BD5B	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma16g04330

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma16g04330

Paralog	Evidence	Comments
Glyma19g29060	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma16g04330 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.16g039300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma16g04330

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma16g04330

Limit To All Plant Sequences

>Glyma16g04330.1   sequence type=CDS   gene model=Glyma16g04330   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTAAAATCTCCATTTTGTTGGTGGGGCTTTGGGTACTAGGAAGCTGGACAGGGTTGTTGGATGCAGAATACATGAAATACAAAGACCCTAAACAGTCGATTGACACACGCGTTGAGGATCTTGTTAGCAGGATGACTCTTGAGGAGAAAATTGGCCAAATGTTGCAGATTGAACGAAAATATGCATCTGCTGATTTGGTTAAGAAGTATTTTATTGGGAGTGTAATGAGTGAGGGAGGGAGTGTTCCAGCTCCACAGGCTTCTGCTGAAACCTGGATTGACATGGTGAATGAATTTCAGAAGGGTGCTGTATCAACCAGGCTTGGAATTCCAATGTTTTATGGGATTGATGCTGTTCATGGCCACAACACTATTTACAAAGCAACTATTTTTCCTCACAATATTGGTCTTGGAGCCACCAGGGACCCTGAACTAGTTAAGAGGATTGGAGCTGCAACTGCCCTTGAAATTAGAGCAACAGGAATTCAATATACTTATGCACCTTGTATTGCAGTATGTAGAGATCCAAGATGGGGTCGCTGTTACGAAAGCTACAGTGAAGATCCTAAACTAGTTCAAGCTATGACTGAAATCATACCAGGATTGCAAGGGGAAATCCCTGACAATTTACCAAAGGGTGTCCCTTTTATCACTGGAAAAGAAAAAGTTCTTGCTTGTGCTAAGCACTATGTGGGTGATGGTGGAACAATCAATGGGATTGATGAGAACAACACTGTTATAGATAGAGATGGATTGATGAGAATTCACATGCCAGGCTACTTCAACTCAATCAGCAAGGGCGTGGCATCCATTATGGTCTCTTACTCCAGTTGGAACGGGGAAAAAATGCATGCTAACCAGGACCTTATTACTGGCTACCTCAAGAATACTCTCCATTTCAAGGGCTTTGTTATTTCAGATTTTGAGGGTATTGATAGGATCACCTCACCACCTCATGCAAACTTCACTTATTCAATTGAAGCAGGAGTTTCTGCTGGCATTGACATGTTCATGAATCCAAAGCTTTACATAGAATTCATAGAAGATTTAACAATGTTGGTGAAAAACAAGTTCATTCCTATGAGTCGGATTGATGATGCGGTGAGAAGAATTTTGTGGGTTAAGTTCATGATGGGTATTTTTGAGACCCCTTTTGCTGATTACAGTTTGGTCAGATATTTGGGGATCCAGAAACATAGACAATTGGCAAGGGAAGCTGTAAGGAAATCAATGGTCCTTCTGAAAAATGGTGAATCTGCTGACAAGCCTTTATTGCCACTTCCTAAAAAGGTGCCTAAAATACTTGTGGCTGGAAGCCATGCTGATAATTTAGGATATCAGTGTGGTGGCTGGACCATAAAATGGCAAGGAGTTAGTGGAAACAATCTTCTCAAAGGGACTACAATTCTCGCTGCTGTTAAAAACACTGTTGATCCTGATACCACAGTGGTCTACAAGGACAACCCTGATGCAGAATTTGTAAAATCCAACGGATTTTCCTATGCTATAGTTGTAGTAGGAGAGCATCCGTATGCTGAAATGCATGGTGATAACATGAACTTGACAATCCCAGACCATGGTCCTGAGACCATAACAAATGTCTGTGGAGCAATAAAATGTGTGGTTATCATTATTTCTGGCCGTCCTGTCGTTATTGAACCATATGTTGGTTCAATAGATGCACTAGTTGCTGCATGGCTTCCAGGTAGTGAAGGCCAAGGTGTTGCTGATGTTTTATTTGGTGACTATGGTTTCACAGGAAAGCTTCCAAGGACATGGTTCAAAACTGTTGATCAACTCCCAATGAATGTTGAAGATCCTCACTATGATCCTCTCTTCCCATTTGGGTTTGGTCTTTCTACCAAACCAACTAAGGGCTTTTATTCTGAGTAG

Predicted protein sequences of Glyma16g04330

Limit To All Plant Sequences

>Glyma16g04330.1   sequence type=predicted peptide   gene model=Glyma16g04330   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAKISILLVGLWVLGSWTGLLDAEYMKYKDPKQSIDTRVEDLVSRMTLEEKIGQMLQIERKYASADLVKKYFIGSVMSEGGSVPAPQASAETWIDMVNEFQKGAVSTRLGIPMFYGIDAVHGHNTIYKATIFPHNIGLGATRDPELVKRIGAATALEIRATGIQYTYAPCIAVCRDPRWGRCYESYSEDPKLVQAMTEIIPGLQGEIPDNLPKGVPFITGKEKVLACAKHYVGDGGTINGIDENNTVIDRDGLMRIHMPGYFNSISKGVASIMVSYSSWNGEKMHANQDLITGYLKNTLHFKGFVISDFEGIDRITSPPHANFTYSIEAGVSAGIDMFMNPKLYIEFIEDLTMLVKNKFIPMSRIDDAVRRILWVKFMMGIFETPFADYSLVRYLGIQKHRQLAREAVRKSMVLLKNGESADKPLLPLPKKVPKILVAGSHADNLGYQCGGWTIKWQGVSGNNLLKGTTILAAVKNTVDPDTTVVYKDNPDAEFVKSNGFSYAIVVVGEHPYAEMHGDNMNLTIPDHGPETITNVCGAIKCVVIIISGRPVVIEPYVGSIDALVAAWLPGSEGQGVADVLFGDYGFTGKLPRTWFKTVDQLPMNVEDPHYDPLFPFGFGLSTKPTKGFYSE*

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