Glyma16g04290 - SoyBase

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Report for Sequence Feature Glyma16g04290

Feature Type:	gene_model
Chromosome:	Gm16
Start:	3627947
stop:	3632128
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma16g04290

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G32450	AT	Annotation by Michelle Graham. TAIR10: RNA binding (RRM/RBD/RNP motifs) family protein \| chr5:12079707-12081317 FORWARD LENGTH=267	SoyBase	E_val: 2.00E-131	ISS
GO:0000166	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleotide binding	SoyBase	N/A	ISS
GO:0003676	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleic acid binding	SoyBase	N/A	ISS
PTHR11732	Panther	ALDO/KETO REDUCTASE	JGI		ISS
PTHR11732:SF1	Panther	DIMERIC DIHYDRODIOL DEHYDROGENASE-RELATED	JGI		ISS
PF00076	PFAM	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	JGI		ISS
UniRef100_G7L0G8	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Protein vip1 n=1 Tax=Medicago truncatula RepID=G7L0G8_MEDTR	SoyBase	E_val: 1.00E-143	ISS
UniRef100_I1MKZ6	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1MKZ6_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma16g04290

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma16g04290

Paralog	Evidence	Comments
Glyma19g29121	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma16g04290 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.16g038800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma16g04290

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma16g04290

Limit To All Plant Sequences

>Glyma16g04290.2   sequence type=transcript   gene model=Glyma16g04290   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATTCTAACACCACACATTCCTCTGTTATTTCTTTATCTTTGTTTTCTTATTCTTCTTCTTCTTCTTCAATGCAACTCTATTCTGTTCGGTGACACAACATACATCACTCTGAAGAACATAGCACGCGTGGCCCCTTTCTTTCTCTCTCTCTCTCTTCAACAACTCTGCTCTCAGAACAGATACAGTTTCCACTGAGTAAATCGCAATGCAGACGAGGACTGTTCAAGTTAAGCAGCTTTCAGATCTAGCTGGTGTAAGAGAGATTCACGAGTTCTTCTCCTTTTCTGGAGAAATCGAGCATGTTGAGATCCTGAGTGAAGATGGGAAATCAAAGACTGCATATGTGACATTTAAAGATCCCAAAGCACTTGAAATTGCATTATTATTATCGGGAGCAACAATAGTAGACCAGGTTGTGAAGATAACTCCAGCTGAGAACTATGTACCAAATCGTGAGATGCAGGAAGTAAGAGTGGTGGAAAATGCTATAAATGTTGTTCCTTCTGAGAATTCTGAGAACGTCTCCTCAAATATTGAGGAGGGGATAGCCAGCCCCACCAATAGAAGAATCTACCTTAGTAGAGCACAAGATGCAGTTACAAATATGCTGGCGAAAGGTTCAGCAATAAGACAAGATGCAGTGAACAAAGCTAAAGCATTTGATGAAAAGCATCAATTGACTGCCAATGCATCTGCAAAGGTCATTTCTTTTGACAAGAGAGTTGGACTGACGGAGAAATTGACAGTAGGCATCGCTGCAATGAACCAGAAAGTCAAGTCTGTGGATCAGAGGCTTCAGGTGTCAGATAAAACAATGGCAGCAATAATTGCAGCTGAGAGGAAGATAAATGACACTGGATCAGCTGTCAAAACAAGCAGATATGTGACTGCTGGAACAGCATGGTTCAATGGTGCTTTTAGCAAGGTGGCAAAGGCTGGACATGTTGCAAGTTCTAAAACTAGAGAAAAATTTCATTTGGCTGTTTCAAACTTGACATCAAAGGAACCGTCAGTGGCTGCTGCATAGGCCACAATTTTTGGTAATCAAAGTCACTTCATCAGGACATTCAGAACACGTGTTTGAAACTATTTGGTCTTTCTGAGCATGTGCTGCTTGCTTCCTCTCCAACGGTTAGATGCATGTGGCAAGTGCGGTGATTCAATTTAATCCTATTTTTTGTATTCTTTTGTCACTCTGGTGTTTTAGTTGTTACTTCCATATAATTTAGCAAGAGTGATTTTGGTTTCTTCTTTTTTTCCCTTTTGTGAAAAGGAAATTTATAGGTGTGATGCTACTGCATTTCTTTTGTCAAAGTTCAGAAAAATTGTTGTGCATGTATAACTTGACATATTGTTCCAAAGATTTCTGTGGGAAATTATCATCTTGCAGACTACAAAATTTCATTTCTTAGCTGATGCTATTGATTGAAATTGTAAAGAATTGTGTTGTGTTAGCTCC

>Glyma16g04290.3   sequence type=transcript   gene model=Glyma16g04290   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TCAAATTCAATATGATTGCATTTTGTGTGTCTGTTTGTTGCAGTGAAGATGGGAAATCAAAGACTGCATATGTGACATTTAAAGATCCCAAAGCACTTGAAATTGCATTATTATTATCGGGAGCAACAATAGTAGACCAGGTTGTGAAGATAACTCCAGCTGAGAACTATGTACCAAATCGTGAGATGCAGGAAGTAAGAGTGGTGGAAAATGCTATAAATGTTGTTCCTTCTGAGAATTCTGAGAACGTCTCCTCAAATATTGAGGAGGGGATAGCCAGCCCCACCAATAGAAGAATCTACCTTAGTAGAGCACAAGATGCAGTTACAAATATGCTGGCGAAAGGTTCAGCAATAAGACAAGATGCAGTGAACAAAGCTAAAGCATTTGATGAAAAGCATCAATTGACTGCCAATGCATCTGCAAAGGTCATTTCTTTTGACAAGAGAGTTGGACTGACGGAGAAATTGACAGTAGGCATCGCTGCAATGAACCAGAAAGTCAAGTCTGTGGATCAGAGGCTTCAGGTGTCAGATAAAACAATGGCAGCAATAATTGCAGCTGAGAGGAAGATAAATGACACTGGATCAGCTGTCAAAACAAGCAGATATGTGACTGCTGGAACAGCATGGTTCAATGGTGCTTTTAGCAAGGTGGCAAAGGCTGGACATGTTGCAAGTTCTAAAACTAGAGAAAAATTTCATTTGGCTGTTTCAAACTTGACATCAAAGGAACCGTCAGTGGCTGCTGCATAGGCCACAATTTTTGGTAATCAAAGTCACTTCATCAGGACATTCAGAACACGTGTTTGAAACTATTTGGTCTTTCTGAGCATGTGCTGCTTGCTTCCTCTCCAACGGTTAGATGCATGTGGCAAGTGCGGTGATTCAATTTAATCCTATTTTTTGTATTCTTTTGTCACTCTGGTGTTTTAGTTGTTACTTCCATATAATTTAGCAAGAGTGATTTTGGTTTCTTCTTTTTTTCCCTTTTGTGAAAAGGAAATTTATAGGTGTGATGCTACTGCATTTCTTTTGTCAAAGTTCAGAAAAATTGTTGTGCATGTATAACTTGACATATTGTTCCAAAGATTTCTGTGGGAAATTATCATCTTGCAGACTACAAAATTTCATTTCTTAGCTGATGCTATTGATTGAAATTGTAAAGAATTGTGTTGTGTTAGCTCC

Coding sequences of Glyma16g04290

Limit To All Plant Sequences

>Glyma16g04290.1   sequence type=CDS   gene model=Glyma16g04290   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCAGGTAACTGAGACGAGGACTGTTCAAGTTAAGCAGCTTTCAGATCTAGCTGGTGTAAGAGAGATTCACGAGTTCTTCTCCTTTTCTGGAGAAATCGAGCATGTTGAGATCCTGAGTGAAGATGGGAAATCAAAGACTGCATATGTGACATTTAAAGATCCCAAAGCACTTGAAATTGCATTATTATTATCGGGAGCAACAATAGTAGACCAGGTTGTGAAGATAACTCCAGCTGAGAACTATGTACCAAATCGTGAGATGCAGGAAGTAAGAGTGGTGGAAAATGCTATAAATGTTGTTCCTTCTGAGAATTCTGAGAACGTCTCCTCAAATATTGAGGAGGGGATAGCCAGCCCCACCAATAGAAGAATCTACCTTAGTAGAGCACAAGATGCAGTTACAAATATGCTGGCGAAAGGTTCAGCAATAAGACAAGATGCAGTGAACAAAGCTAAAGCATTTGATGAAAAGCATCAATTGACTGCCAATGCATCTGCAAAGGTCATTTCTTTTGACAAGAGAGTTGGACTGACGGAGAAATTGACAGTAGGCATCGCTGCAATGAACCAGAAAGTCAAGTCTGTGGATCAGAGGCTTCAGGTGTCAGATAAAACAATGGCAGCAATAATTGCAGCTGAGAGGAAGATAAATGACACTGGATCAGCTGTCAAAACAAGCAGATATGTGACTGCTGGAACAGCATGGTTCAATGGTGCTTTTAGCAAGGTGGCAAAGGCTGGACATGTTGCAAGTTCTAAAACTAGAGAAAAATTTCATTTGGCTGTTTCAAACTTGACATCAAAGGAACCGTCAGTGGCTGCTGCATAG

>Glyma16g04290.2   sequence type=CDS   gene model=Glyma16g04290   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCAGACGAGGACTGTTCAAGTTAAGCAGCTTTCAGATCTAGCTGGTGTAAGAGAGATTCACGAGTTCTTCTCCTTTTCTGGAGAAATCGAGCATGTTGAGATCCTGAGTGAAGATGGGAAATCAAAGACTGCATATGTGACATTTAAAGATCCCAAAGCACTTGAAATTGCATTATTATTATCGGGAGCAACAATAGTAGACCAGGTTGTGAAGATAACTCCAGCTGAGAACTATGTACCAAATCGTGAGATGCAGGAAGTAAGAGTGGTGGAAAATGCTATAAATGTTGTTCCTTCTGAGAATTCTGAGAACGTCTCCTCAAATATTGAGGAGGGGATAGCCAGCCCCACCAATAGAAGAATCTACCTTAGTAGAGCACAAGATGCAGTTACAAATATGCTGGCGAAAGGTTCAGCAATAAGACAAGATGCAGTGAACAAAGCTAAAGCATTTGATGAAAAGCATCAATTGACTGCCAATGCATCTGCAAAGGTCATTTCTTTTGACAAGAGAGTTGGACTGACGGAGAAATTGACAGTAGGCATCGCTGCAATGAACCAGAAAGTCAAGTCTGTGGATCAGAGGCTTCAGGTGTCAGATAAAACAATGGCAGCAATAATTGCAGCTGAGAGGAAGATAAATGACACTGGATCAGCTGTCAAAACAAGCAGATATGTGACTGCTGGAACAGCATGGTTCAATGGTGCTTTTAGCAAGGTGGCAAAGGCTGGACATGTTGCAAGTTCTAAAACTAGAGAAAAATTTCATTTGGCTGTTTCAAACTTGACATCAAAGGAACCGTCAGTGGCTGCTGCATAG

>Glyma16g04290.3   sequence type=CDS   gene model=Glyma16g04290   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATTGCATTTTGTGTGTCTGTTTGTTGCAGTGAAGATGGGAAATCAAAGACTGCATATGTGACATTTAAAGATCCCAAAGCACTTGAAATTGCATTATTATTATCGGGAGCAACAATAGTAGACCAGGTTGTGAAGATAACTCCAGCTGAGAACTATGTACCAAATCGTGAGATGCAGGAAGTAAGAGTGGTGGAAAATGCTATAAATGTTGTTCCTTCTGAGAATTCTGAGAACGTCTCCTCAAATATTGAGGAGGGGATAGCCAGCCCCACCAATAGAAGAATCTACCTTAGTAGAGCACAAGATGCAGTTACAAATATGCTGGCGAAAGGTTCAGCAATAAGACAAGATGCAGTGAACAAAGCTAAAGCATTTGATGAAAAGCATCAATTGACTGCCAATGCATCTGCAAAGGTCATTTCTTTTGACAAGAGAGTTGGACTGACGGAGAAATTGACAGTAGGCATCGCTGCAATGAACCAGAAAGTCAAGTCTGTGGATCAGAGGCTTCAGGTGTCAGATAAAACAATGGCAGCAATAATTGCAGCTGAGAGGAAGATAAATGACACTGGATCAGCTGTCAAAACAAGCAGATATGTGACTGCTGGAACAGCATGGTTCAATGGTGCTTTTAGCAAGGTGGCAAAGGCTGGACATGTTGCAAGTTCTAAAACTAGAGAAAAATTTCATTTGGCTGTTTCAAACTTGACATCAAAGGAACCGTCAGTGGCTGCTGCATAG

Predicted protein sequences of Glyma16g04290

Limit To All Plant Sequences

>Glyma16g04290.1   sequence type=predicted peptide   gene model=Glyma16g04290   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MQVTETRTVQVKQLSDLAGVREIHEFFSFSGEIEHVEILSEDGKSKTAYVTFKDPKALEIALLLSGATIVDQVVKITPAENYVPNREMQEVRVVENAINVVPSENSENVSSNIEEGIASPTNRRIYLSRAQDAVTNMLAKGSAIRQDAVNKAKAFDEKHQLTANASAKVISFDKRVGLTEKLTVGIAAMNQKVKSVDQRLQVSDKTMAAIIAAERKINDTGSAVKTSRYVTAGTAWFNGAFSKVAKAGHVASSKTREKFHLAVSNLTSKEPSVAAA*

>Glyma16g04290.2   sequence type=predicted peptide   gene model=Glyma16g04290   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MQTRTVQVKQLSDLAGVREIHEFFSFSGEIEHVEILSEDGKSKTAYVTFKDPKALEIALLLSGATIVDQVVKITPAENYVPNREMQEVRVVENAINVVPSENSENVSSNIEEGIASPTNRRIYLSRAQDAVTNMLAKGSAIRQDAVNKAKAFDEKHQLTANASAKVISFDKRVGLTEKLTVGIAAMNQKVKSVDQRLQVSDKTMAAIIAAERKINDTGSAVKTSRYVTAGTAWFNGAFSKVAKAGHVASSKTREKFHLAVSNLTSKEPSVAAA*

>Glyma16g04290.3   sequence type=predicted peptide   gene model=Glyma16g04290   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MIAFCVSVCCSEDGKSKTAYVTFKDPKALEIALLLSGATIVDQVVKITPAENYVPNREMQEVRVVENAINVVPSENSENVSSNIEEGIASPTNRRIYLSRAQDAVTNMLAKGSAIRQDAVNKAKAFDEKHQLTANASAKVISFDKRVGLTEKLTVGIAAMNQKVKSVDQRLQVSDKTMAAIIAAERKINDTGSAVKTSRYVTAGTAWFNGAFSKVAKAGHVASSKTREKFHLAVSNLTSKEPSVAAA*

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