Glyma16g04180 - SoyBase

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Report for Sequence Feature Glyma16g04180

Feature Type:	gene_model
Chromosome:	Gm16
Start:	3550508
stop:	3557007
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma16g04180

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G21720	AT	Annotation by Michelle Graham. TAIR10: Plant protein of unknown function (DUF639) \| chr2:9273696-9276802 FORWARD LENGTH=734	SoyBase	E_val: 0	ISS
PF04842	PFAM	Plant protein of unknown function (DUF639)	JGI		ISS
UniRef100_I1MKY2	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MKY2_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q8LMQ8	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Expressed protein n=1 Tax=Oryza sativa Japonica Group RepID=Q8LMQ8_ORYSJ	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma16g04180

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma16g04180

Paralog	Evidence	Comments
Glyma19g29220	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma16g04180 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.16g037800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma16g04180

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma16g04180

Limit To All Plant Sequences

>Glyma16g04180.1   sequence type=CDS   gene model=Glyma16g04180   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGATGAAACTCAAGTATCTGTCTTCCATTGCCGAGGATGTCATCAAGAGATGTTCACAGAAACTGGACACTTCAGTAGAGAAATTGGTGGAAGATTTTGAAGGAGGATGGAACCCTGAAATGGGAAACTATTGCAGAAAATTAGTTGAATTTTGCAGTGGGAAGGGTGTGAATGAAATGTGCCACAACATAGAGGGAAACATCAATGATAGCTCATTTAGCAGGTTGACATATGACATGATGCTTGCTTGGGAGAGACCTAGCTACTACGATGAAGAACCAATGGAGACTGTAGCAAAGGAGAAAGAAGAAAGGAAGATAACTTTGAATACCACTCAAGAACTGGATGATATCCCTCTTTTTTATTCAGACATCATGCCCCTCCTTGTTAATAATGAGCCCAATGTTGGAGAAGATGCATTTGTATGGTTGGGATCATTAGTACCTTTAGTTGCAGATGTATCAAATGGAAGGTTTACTTTTGAATCTCTGACAGCACCAACAGGCAACCGACTACATTTTCCAGCATACGACATGTTCTTAAAAGAAATGGACAAGTGCATACGACATTTGCAGAAACATGCAACACCAAATGGGGTTGAACTGGCTGAGGATGAATATATATTACATGTAGATGGAACAGCCAGCACACAGAGAGTAGTTCGGCACATTGGAACAACAAGTTGGCCTGGTAGGCTTACACTGACCAATTACTCTCTTTACTTTGAGGCTTCCGGAGTAATAAGGTATGAAGATGCTCTCAAAATAGACCTCTCCAAGAATGTTGAGCAGAGTGTTAAACCTGCTGCCACAGGTCCATGGGGAGCTCAACTTTATGACAAAGCCATAATCTATGATTCAACTGATTTATCGGAGACAGTTGTACTGGAGTTTCCAGAGCTTACGAGTTCCACGAGACGTGATCATTGGCTTGCACTAGTAAGGGAAATAATGTTTCTCCACCAATTTTTATCGAAGAACCAGATAAATTGTCTAATACAAACATGGGAGCTGCATTCAAGGACAATCTTGGGAATCGTAAGGCTGCATGCAGCAAGAGAAATGCTAAGAATATCACCTCCTGTCCCAACAAAATTCTTAATATTTTCCTTATACAACGAGATACCAAAGGGAGATTATGTGCTAGAAGAGCTCGCGGATAGCCTCAAAAAGGGCAATAATGGACAGTCATGTAGTGCAAGTTCTATCCTTAGGAGTATGAACATTTCCAAAAGTGTAGATTCTGATATAATAATAGATGAGGCAAGTCAAGCAGATGGAAGTGTTAATGTTGTAGACGATAGTCCCTCATTGGAGGCTGCTATCAAACAATCTAGGGAGGAAGAAAAGGAAATTCTCATTGCTAAAGCTACCACTGATGAATTAAAGGAGGAAGGAGTCACTGACAGTGTTTTGGTTATAACGGAACTACTGAAGCCACTTAAAAATGCAGTCCCTTGGTTTCAAGAAATCTTCACATGGGAAAGGCCAATAATTACTCTTGCTGTTCTTGCTGCATCCTTGATGATCACCTATATGGAATGGGTTGGCAAGACATTTGCAGTTTTCTTGATTTGGGCAATAATAAAGATGCTTGATGCAAGACAGAAAAATATTCATGATAAAAGTAACGAGATAGTAATCAGTAGATCCAGTATGGCTTCTGATCAATCTACGATGGAGAGCATTGTCTCAGCCCAGCATGGATTGTATACTGTTCATGACATGATGCAGATAGCAAACATAGCAATGCTAAAGATATGGTCAATACTTATTTCAAAGGCTGATAAGCATGCAAATTTAGTGATGGTGGCAATGAGTGGATTGGCAATCTTATTGGCAGTAATTCCATTCAAATTCTTCCTTATGGCTCTCATTCTCCAAAGCTTCACTATGACATTAGGAAAGTCCTCTGGAAGTGGAACAGGGAATAGACGGTTAAGGGAATGGTGGGATTCAATACCAATTGTTCCTATCCGTGTAGTAGATGATCCTAACACTGTTGATGCTAAATAA

Predicted protein sequences of Glyma16g04180

Limit To All Plant Sequences

>Glyma16g04180.1   sequence type=predicted peptide   gene model=Glyma16g04180   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAMKLKYLSSIAEDVIKRCSQKLDTSVEKLVEDFEGGWNPEMGNYCRKLVEFCSGKGVNEMCHNIEGNINDSSFSRLTYDMMLAWERPSYYDEEPMETVAKEKEERKITLNTTQELDDIPLFYSDIMPLLVNNEPNVGEDAFVWLGSLVPLVADVSNGRFTFESLTAPTGNRLHFPAYDMFLKEMDKCIRHLQKHATPNGVELAEDEYILHVDGTASTQRVVRHIGTTSWPGRLTLTNYSLYFEASGVIRYEDALKIDLSKNVEQSVKPAATGPWGAQLYDKAIIYDSTDLSETVVLEFPELTSSTRRDHWLALVREIMFLHQFLSKNQINCLIQTWELHSRTILGIVRLHAAREMLRISPPVPTKFLIFSLYNEIPKGDYVLEELADSLKKGNNGQSCSASSILRSMNISKSVDSDIIIDEASQADGSVNVVDDSPSLEAAIKQSREEEKEILIAKATTDELKEEGVTDSVLVITELLKPLKNAVPWFQEIFTWERPIITLAVLAASLMITYMEWVGKTFAVFLIWAIIKMLDARQKNIHDKSNEIVISRSSMASDQSTMESIVSAQHGLYTVHDMMQIANIAMLKIWSILISKADKHANLVMVAMSGLAILLAVIPFKFFLMALILQSFTMTLGKSSGSGTGNRRLREWWDSIPIVPIRVVDDPNTVDAK*

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