Glyma16g04120 - SoyBase

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Report for Sequence Feature Glyma16g04120

Feature Type:	gene_model
Chromosome:	Gm16
Start:	3507519
stop:	3510361
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma16g04120

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G31220	AT	Annotation by Michelle Graham. TAIR10: Formyl transferase \| chr1:11157064-11158408 FORWARD LENGTH=292	SoyBase	E_val: 1.00E-111	ISS
GO:0006189	GO-bp	Annotation by Michelle Graham. GO Biological Process: 'de novo' IMP biosynthetic process	SoyBase	N/A	ISS
GO:0009058	GO-bp	Annotation by Michelle Graham. GO Biological Process: biosynthetic process	SoyBase	N/A	ISS
GO:0009152	GO-bp	Annotation by Michelle Graham. GO Biological Process: purine ribonucleotide biosynthetic process	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0004644	GO-mf	Annotation by Michelle Graham. GO Molecular Function: phosphoribosylglycinamide formyltransferase activity	SoyBase	N/A	ISS
GO:0008168	GO-mf	Annotation by Michelle Graham. GO Molecular Function: methyltransferase activity	SoyBase	N/A	ISS
GO:0008864	GO-mf	Annotation by Michelle Graham. GO Molecular Function: formyltetrahydrofolate deformylase activity	SoyBase	N/A	ISS
GO:0016742	GO-mf	Annotation by Michelle Graham. GO Molecular Function: hydroxymethyl-, formyl- and related transferase activity	SoyBase	N/A	ISS
KOG3076	KOG	5'-phosphoribosylglycinamide formyltransferase	JGI		ISS
PTHR10520	Panther	PHOSPHORIBOSYLAMINE-GLYCINE LIGASE	JGI		ISS
PF00551	PFAM	Formyl transferase	JGI		ISS
UniRef100_I1MKX7	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MKX7_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q7XJ86	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Glycinamide ribonucleotide transformylase n=1 Tax=Glycine max RepID=Q7XJ86_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma16g04120

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma16g04120

Paralog	Evidence	Comments
Glyma19g29380	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma16g04120 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.16g037200	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma16g04120

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma16g04120

Limit To All Plant Sequences

>Glyma16g04120.1   sequence type=CDS   gene model=Glyma16g04120   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAAGGTCGACAGATTCTTTCCAGATTCTGTCCAAAATCATCTTCAGTGTCATCTATTCCAATTGTGAAGCAGCAATACTCTCTAAAGTTCCCTCTTTTACCTTCTTCATCGTCGCATCTTTCTAGTCAATCTCAGAATCTCGATGTTCCTAGCAGAGCTGTCCATCCTATCAGCATTGTGCACAAAGAAGTGTGTTCTAGTTCTTGGAGGAGGATATGGTGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTGCTGCAGAACCAAAGGAGGGCCATGAGGTAACGGCTCAGGTCACGGTGGGAAGGAAAAAGCTAGCAGTTTTCGTGTCTGGTGGAGGATCCAACTTCAGAGCCATTCACGAGGCCTCCAAAAGGGGATCACTTCATGGAGATGTTCTTGTGTTGGTCACAAATAAAAGTGATTGTGGAGGTGCGGGGTATGCAAGAAATAACGGTATCCCAGTTATATTGTACCCTAAAGCAAAGGATGAATCCAATCCAAGTGACCTTGTTGAGACACTAAGGAAATTCAAGGTTGATTTTATTCTTTTAGCTGGATACCTCAAACTTATACCAGTGGAATTGATCCGAGCTTACGAAAGATCTATATTCAACATTCATCCATCACTTCTTCCAGCTTTTGGAGGCAAGGGCTTTTATGGCATGAAAGTGCATAAAGCAGTAATTGCTTCTGGAGCAAGGTTTTCAGGTCCTACGATTCATTTTGTTGATGAACACTATGATACAGGGCGTATCCTTGCACAGCGTGTTGTCCCTGTGCTTGCCAATGATACTGCTGAAGAGTTGGCTGCAAGGGTTCTCAAAGAGGAGCACCAATTATATGTGGAGGTGGTGGAGGCTTTATGTGAAGAGCGTGTGGTTTGGAGGAAAGATGGTGTTCCTCTCATACAAAGCAAAGAAAACCCCAATGAGTTTCGCTGA

Predicted protein sequences of Glyma16g04120

Limit To All Plant Sequences

>Glyma16g04120.1   sequence type=predicted peptide   gene model=Glyma16g04120   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEGRQILSRFCPKSSSVSSIPIVKQQYSLKFPLLPSSSSHLSSQSQNLDVPSRAVHPISIVHKEVCSSSWRRIWCSSSSSSSSSSSSAAEPKEGHEVTAQVTVGRKKLAVFVSGGGSNFRAIHEASKRGSLHGDVLVLVTNKSDCGGAGYARNNGIPVILYPKAKDESNPSDLVETLRKFKVDFILLAGYLKLIPVELIRAYERSIFNIHPSLLPAFGGKGFYGMKVHKAVIASGARFSGPTIHFVDEHYDTGRILAQRVVPVLANDTAEELAARVLKEEHQLYVEVVEALCEERVVWRKDGVPLIQSKENPNEFR*

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