SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G35220 | AT | Annotation by Michelle Graham. TAIR10: Peptidase M50 family protein | chr5:13484606-13487546 REVERSE LENGTH=548 | SoyBase | E_val: 0 | ISS |
| GO:0006499 | GO-bp | Annotation by Michelle Graham. GO Biological Process: N-terminal protein myristoylation | SoyBase | N/A | ISS |
| GO:0009416 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to light stimulus | SoyBase | N/A | ISS |
| GO:0009630 | GO-bp | Annotation by Michelle Graham. GO Biological Process: gravitropism | SoyBase | N/A | ISS |
| GO:0009658 | GO-bp | Annotation by Michelle Graham. GO Biological Process: chloroplast organization | SoyBase | N/A | ISS |
| GO:0009723 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to ethylene stimulus | SoyBase | N/A | ISS |
| GO:0009959 | GO-bp | Annotation by Michelle Graham. GO Biological Process: negative gravitropism | SoyBase | N/A | ISS |
| GO:0010027 | GO-bp | Annotation by Michelle Graham. GO Biological Process: thylakoid membrane organization | SoyBase | N/A | ISS |
| GO:0010207 | GO-bp | Annotation by Michelle Graham. GO Biological Process: photosystem II assembly | SoyBase | N/A | ISS |
| GO:0043157 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to cation stress | SoyBase | N/A | ISS |
| GO:0048564 | GO-bp | Annotation by Michelle Graham. GO Biological Process: photosystem I assembly | SoyBase | N/A | ISS |
| GO:0060359 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to ammonium ion | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0016020 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: membrane | SoyBase | N/A | ISS |
| GO:0004222 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: metalloendopeptidase activity | SoyBase | N/A | ISS |
| PF02163 | PFAM | Peptidase family M50 | JGI | ISS | |
| UniRef100_A2Q1L2 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Peptidase M50, mammalian sterol-regulatory element binding protein n=1 Tax=Medicago truncatula RepID=A2Q1L2_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_I1MKX6 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MKX6_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma16g04110 not represented in the dataset |
Glyma16g04110 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma19g29390 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.16g037100 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma16g04110.1 sequence type=CDS gene model=Glyma16g04110 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGGGACTCTAACGAGTTGCAGTTTCATGCCTCTGAACTCGGAGTTTCGCCGCGCCTTCAGGGAGAGGATTCAGTGCCACAAGCTCACGCGCTTGAGGGGCACCTCCTGCTTCTTCTCACGCGCGCGAGTACCCAAATGGGGCAAGTCGAAGCTCCCCAATTTCGATAGCCTTAGGAGTTTTGCTACTAAGAACGACAACAGCGACGGCGACAAGGACAACAGCAACCACGTTGGAGCCGCCGGAGAGGAAAGTGGCGGCGACGATTCTAAATCAAATGTTACGACGACGATGGCCGAAGAAGAGAGAGGGTTCACTTCGGAGAAATCGACGCCTCCTTCCACTTCTCACAGGTCGTCTTTGTCGTCGCTTGGACCAGCATACAACACTTTTCAAGTTGATTCTTTCAAACTTATTGAGCTCCTTGGGCCTGAGAAGGTTGATCCTGCTGATGTAAAGCTGATCAAGGATAAGCTTTTTGGGTATTCGACCTTCTGGGTGACGAAAGAGGAGCCTTTTGGAGACTTGGGAGAAGGCATTCTTTTCATTGGGAATTTAAGGGGGAAGAGAGAAGATGTTTTTGCCAAACTCCAGAATCAGCTAGTTGAGGTCACGGGTGATAAGTACAACCTTTTTATGGTGGAGGAACCCAATGCGGACAGTCCTGATCCACGTGGTGGGCCACGTGTTAGCTTTGGTTTGCTGCGGAAGGAGGTTTCTGAGCCAGGGCCGACGACACTTTGGCAATATGTCATTGCATTGCTGTTGTTTCTCCTAACTATTGGTTCCTCAGTGGAGCTAGGAATTGCATCTCAGATCAACAGACTTCCTCCAGAAGTTGTGAAATATTTCACAGATCCAGATGCTGTTGAAGCTCCAGATATGGAGCTTCTATTTCCATTTGTTGACTCGGCTTTACCTTTAGCATATGGTGTCTTGGGGGTTCTTCTGTTTCATGAGGTTGGACACTTTCTAGCAGCATTTCCTAAACAAGTAAAATTAAGCATACCTTTCTTCATTCCAAACATCACACTTGGCAGCTTTGGTGCTATTACACAGTTTAAATCCATCCTTCCAGATAGAAGTACACAAGTAGACATATCACTTGCAGGTCCCTTTGCTGGTGCTGTATTATCATTTTCGATGTTTGCTGTTGGTCTTCTTCTCTCATCAAATCCAGATACAACAGGAGATTTGGTGCAAGTACCTAGCTTGTTGTTTCAAGGTTCCTTGCTTCTTGGATTGATCAGTAGAGCAACCCTTGGTTATGCAGCAATGCATGCTGCAACAGTTCCAATTCACCCTCTTGTGATTGCAGGCTGGTGTGGCTTAACCATACAAGCTTTTAACATGCTTCCAGTGGGGTGCCTTGATGGTGGAAGAGCAGTGCAGGGTGCTTTTGGAAAAAATGCGCTAGTGGGCTTTGGTTTAACAACATATACATTGCTTGGATTAGGAGTGCTTGGTGGACCTCTTTCACTTCCTTGGGGACTTTATGTTTTGTTATGTCAGAGGGCACCGGAGAAACCATGCTTAAATGATGTGACAGAGGTTGGAACATGGAGAAAGGCACTTGTGGCAATTGCTATTTTTCTTGTTGTCTTGACTCTTGTTCCTGTTGGGGATGAGCTTGCAGAGGAACTGGGTATAGGTCTTGTAACTGCATTTTGA
>Glyma16g04110.1 sequence type=predicted peptide gene model=Glyma16g04110 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MGTLTSCSFMPLNSEFRRAFRERIQCHKLTRLRGTSCFFSRARVPKWGKSKLPNFDSLRSFATKNDNSDGDKDNSNHVGAAGEESGGDDSKSNVTTTMAEEERGFTSEKSTPPSTSHRSSLSSLGPAYNTFQVDSFKLIELLGPEKVDPADVKLIKDKLFGYSTFWVTKEEPFGDLGEGILFIGNLRGKREDVFAKLQNQLVEVTGDKYNLFMVEEPNADSPDPRGGPRVSFGLLRKEVSEPGPTTLWQYVIALLLFLLTIGSSVELGIASQINRLPPEVVKYFTDPDAVEAPDMELLFPFVDSALPLAYGVLGVLLFHEVGHFLAAFPKQVKLSIPFFIPNITLGSFGAITQFKSILPDRSTQVDISLAGPFAGAVLSFSMFAVGLLLSSNPDTTGDLVQVPSLLFQGSLLLGLISRATLGYAAMHAATVPIHPLVIAGWCGLTIQAFNMLPVGCLDGGRAVQGAFGKNALVGFGLTTYTLLGLGVLGGPLSLPWGLYVLLCQRAPEKPCLNDVTEVGTWRKALVAIAIFLVVLTLVPVGDELAEELGIGLVTAF*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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