Report for Sequence Feature Glyma16g04090
Feature Type: gene_model
Chromosome: Gm16
Start: 3480842
stop: 3484564
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma16g04090
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT4G23620 AT
Annotation by Michelle Graham. TAIR10: Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain | chr4:12315016-12316659 REVERSE LENGTH=264
SoyBase E_val: 1.00E-124 ISS
GO:0006412 GO-bp
Annotation by Michelle Graham. GO Biological Process: translation
SoyBase N/A ISS
GO:0006783 GO-bp
Annotation by Michelle Graham. GO Biological Process: heme biosynthetic process
SoyBase N/A ISS
GO:0005622 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: intracellular
SoyBase N/A ISS
GO:0005840 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: ribosome
SoyBase N/A ISS
GO:0009507 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: chloroplast
SoyBase N/A ISS
GO:0003735 GO-mf
Annotation by Michelle Graham. GO Molecular Function: structural constituent of ribosome
SoyBase N/A ISS
GO:0008097 GO-mf
Annotation by Michelle Graham. GO Molecular Function: 5S rRNA binding
SoyBase N/A ISS
GO:0008270 GO-mf
Annotation by Michelle Graham. GO Molecular Function: zinc ion binding
SoyBase N/A ISS
GO:0050897 GO-mf
Annotation by Michelle Graham. GO Molecular Function: cobalt ion binding
SoyBase N/A ISS
UniRef100_I1MKX4 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MKX4_SOYBN
SoyBase E_val: 0 ISS
UniRef100_Q2HVB5 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: 50S ribosomal protein L25 n=1 Tax=Medicago truncatula RepID=Q2HVB5_MEDTR
SoyBase E_val: 1.00E-139 ISS
Expression Patterns of Glyma16g04090
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Paralogs of Glyma16g04090
Paralog Evidence Comments
Glyma19g29410 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma16g04090 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.16g036900 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma16g04090
Coding sequences of Glyma16g04090
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma16g04090.1 sequence type=CDS gene model=Glyma16g04090 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGTATCTCCCCCGCCACCACATCCTCACCAGACTCTCCCCTTACCGCCGTCACTTCTCCCACTCCGCCGCCGCCGTCCTCCGCCCCCCGGAGCCGGAGCCCCTCACCTACCTCGACGGCTTCCCTCGCCCCGATCCCAAGCACGACGAGACCATCCTCGCCGTCCCCCGCGCCGACTCCGGCAAGAACATCTCCGCGAAGGAGCGCCGCGCAGGGCGCCTGCCGAGCATCGTGTTCGAGCAGGAAGACGGCCAGCACGGCGGCAACAAGCGCCTAATCTCCGTTCGCACCGACCAGATCAGAAAACTCGTCAACCACCTCGGCCGCTCCTTCTTCCTCTCCCGCCTCTTCCTCCTCGAAGTTCGCTCCGGCTTCGACTCCGAAAACGACGTCGTCGAGACCGTTCGCGTCTTACCCCGCGCGATTCATTTGAAAGCTGGGACGGATGCGCCGTTGAATGTGACTTTTATTAGGGCTCCGTCGGATGCTTTGTTGAAAGTTGATGTTCCTCTTGTCTTCAGAGGAGAAGATGTATCGCCTGGACTCAAGAAAGGTGCTTCTTTGAATACCATCAAAAGGACTGTCAAGTACTTATGCCCTGCTGACATTATTCCTCCATATATTGACGTTGATCTAAGTGAGTTGGATGTGGGCCAGAAGTTGGTCATGGGAGATCTCAAAGTTCATCCTGCTTTAAAACTTCTTCAGCCAAGAGATGAAGCCGTTGTTAAAATTATGGGCCAAAGAGTTTCTGAACTACAAAAGAAAAAGTAA
Predicted protein sequences of Glyma16g04090
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma16g04090.1 sequence type=predicted peptide gene model=Glyma16g04090 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MYLPRHHILTRLSPYRRHFSHSAAAVLRPPEPEPLTYLDGFPRPDPKHDETILAVPRADSGKNISAKERRAGRLPSIVFEQEDGQHGGNKRLISVRTDQIRKLVNHLGRSFFLSRLFLLEVRSGFDSENDVVETVRVLPRAIHLKAGTDAPLNVTFIRAPSDALLKVDVPLVFRGEDVSPGLKKGASLNTIKRTVKYLCPADIIPPYIDVDLSELDVGQKLVMGDLKVHPALKLLQPRDEAVVKIMGQRVSELQKKK*