Glyma16g04010 - SoyBase

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Report for Sequence Feature Glyma16g04010

Feature Type:	gene_model
Chromosome:	Gm16
Start:	3360728
stop:	3364084
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma16g04010

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G17840	AT	Annotation by Michelle Graham. TAIR10: DnaJ/Hsp40 cysteine-rich domain superfamily protein \| chr5:5895879-5897055 REVERSE LENGTH=154	SoyBase	E_val: 3.00E-47	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0031072	GO-mf	Annotation by Michelle Graham. GO Molecular Function: heat shock protein binding	SoyBase	N/A	ISS
GO:0051082	GO-mf	Annotation by Michelle Graham. GO Molecular Function: unfolded protein binding	SoyBase	N/A	ISS
UniRef100_C6SY15	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=C6SY15_SOYBN	SoyBase	E_val: 7.00E-120	ISS
UniRef100_Q93ZT2	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: DnaJ/Hsp40 cysteine-rich domain-containing protein n=1 Tax=Arabidopsis thaliana RepID=Q93ZT2_ARATH	SoyBase	E_val: 1.00E-44	ISS

Expression Patterns of Glyma16g04010

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma16g04010

Paralog	Evidence	Comments
Glyma19g29540	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma16g04010 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.16g035800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma16g04010

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma16g04010

Limit To All Plant Sequences

>Glyma16g04010.2   sequence type=transcript   gene model=Glyma16g04010   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TAGGTGAATTGAAACGAGCGATTTGTACGAGGAAGTGGTGCTGTTGCATTGCGTGAACAAATTGAGGTGTGGTGTGCATGTTCAACATTGGGCACCGATGATGGGTTCAGCTACTGTGCAAATAGCGACGTCAAAATTTGTTCTTTGCCCGAATGCTTCAGCGGCGAAGGTTGCGAGTCCCAAGAAGAATGCCGTCATCAATTTCTCTTCCAACTTCAAAGGAAGTGTCACCAAAATCCATGCCATTCCCCCTAATGGCTCTGTCTCTATCTGCTCTTCGCGTGTGTCTGTGTCAAGTTTAAAGGCAGATGAGAACAAGCGCAGAAGTAATCTTGAATCCCTGTTTTGTTATGATAAGGCTATTCCAGAAGAAATAATTGAGAAACCTGTTGGGTTATCTTTGGAAGAGAAAGCTATTGGTAACAATACCCGATGCACTGATTGCCAGGCCAAAGGTGCTGTGCTTTGTGCCACTTGTGCTGGTTCTGGTCTATATGTTGACTCCATAATGGAAAGCCAGGGCATAATTGTTAAAGTTCGTTGCTTAGGGTCTGCTGCAGTTGGCTTTCTGCACCCTTTGCAGCTTTGATCCTACAGCTGCAGATTGCGGAATCATGTTTATAATGTTGCGGCGGAACAGGAAATATAATGTGTGCAGAATGTGGTGGACGAGGTCATCTGGGACCCAAATGATCAAGTCTGACTTTTTTGAAATTTGTTGTATTTGTACCTCCAGTATGTAATATTTTCGTTGATATTGATTGTAACCATTTTTATTATTATTATTATTATTTTTGTAAATCAAGGAGTCGTTATGACTGAAACCTAAGATATTTACCAAATTCTCTGCTATTCCTAATGCATGAGCTAAAGCTCACATAGCTGTCATATTTATTCTTAATTATTTCTCAAAGTATTTTCTTTGCTCACAGTGATGATAACCTGTAATACTTTTACATGAAAG

Coding sequences of Glyma16g04010

Limit To All Plant Sequences

>Glyma16g04010.1   sequence type=CDS   gene model=Glyma16g04010   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATGGGTTCAGCTACTGTGCAAATAGCGACGTCAAAATTTGTTCTTTGCCCGAATGCTTCAGCGGCGAAGGTTGCGAGTCCCAAGAAGAATGCCGTCATCAATTTCTCTTCCAACTTCAAAGGAAGTGTCACCAAAATCCATGCCATTCCCCCTAATGGCTCTGTCTCTATCTGCTCTTCGCGTGTGTCTGTGTCAAGTTTAAAGGCAGATGAGAACAAGCGCAGAAGTAATCTTGAATCCCTGTTTTGTTATGATAAGGCTATTCCAGAAGAAATAATTGAGAAACCTGTTGGGTTATCTTTGGAAGAGAAAGCTATTGGTAACAATACCCGATGCACTGATTGCCAGGCCAAAGGTGCTGTGCTTTGTGCCACTTGTGCTGGTTCTGGTCTATATGTTGACTCCATAATGGAAAGCCAGGGCATAATTGTTAAAGTTCGTTGCTTAGGTTGCGGCGGAACAGGAAATATAATGTGTGCAGAATGTGGTGGACGAGGTCATCTGGGACCCAAATGA

>Glyma16g04010.2   sequence type=CDS   gene model=Glyma16g04010   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATGGGTTCAGCTACTGTGCAAATAGCGACGTCAAAATTTGTTCTTTGCCCGAATGCTTCAGCGGCGAAGGTTGCGAGTCCCAAGAAGAATGCCGTCATCAATTTCTCTTCCAACTTCAAAGGAAGTGTCACCAAAATCCATGCCATTCCCCCTAATGGCTCTGTCTCTATCTGCTCTTCGCGTGTGTCTGTGTCAAGTTTAAAGGCAGATGAGAACAAGCGCAGAAGTAATCTTGAATCCCTGTTTTGTTATGATAAGGCTATTCCAGAAGAAATAATTGAGAAACCTGTTGGGTTATCTTTGGAAGAGAAAGCTATTGGTAACAATACCCGATGCACTGATTGCCAGGCCAAAGGTGCTGTGCTTTGTGCCACTTGTGCTGGTTCTGGTCTATATGTTGACTCCATAATGGAAAGCCAGGGCATAATTGTTAAAGTTCGTTGCTTAGGGTCTGCTGCAGTTGGCTTTCTGCACCCTTTGCAGCTTTGA

Predicted protein sequences of Glyma16g04010

Limit To All Plant Sequences

>Glyma16g04010.1   sequence type=predicted peptide   gene model=Glyma16g04010   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MMGSATVQIATSKFVLCPNASAAKVASPKKNAVINFSSNFKGSVTKIHAIPPNGSVSICSSRVSVSSLKADENKRRSNLESLFCYDKAIPEEIIEKPVGLSLEEKAIGNNTRCTDCQAKGAVLCATCAGSGLYVDSIMESQGIIVKVRCLGCGGTGNIMCAECGGRGHLGPK*

>Glyma16g04010.2   sequence type=predicted peptide   gene model=Glyma16g04010   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MMGSATVQIATSKFVLCPNASAAKVASPKKNAVINFSSNFKGSVTKIHAIPPNGSVSICSSRVSVSSLKADENKRRSNLESLFCYDKAIPEEIIEKPVGLSLEEKAIGNNTRCTDCQAKGAVLCATCAGSGLYVDSIMESQGIIVKVRCLGSAAVGFLHPLQL*

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