Glyma16g03660 - SoyBase

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Report for Sequence Feature Glyma16g03660

Feature Type:	gene_model
Chromosome:	Gm16
Start:	3077334
stop:	3079938
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma16g03660

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G03690	AT	Annotation by Michelle Graham. TAIR10: coenzyme Q biosynthesis Coq4 family protein / ubiquinone biosynthesis Coq4 family protein \| chr2:1122122-1123011 REVERSE LENGTH=226	SoyBase	E_val: 3.00E-133	ISS
GO:0006744	GO-bp	Annotation by Michelle Graham. GO Biological Process: ubiquinone biosynthetic process	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
KOG3244	KOG	Protein involved in ubiquinone biosynthesis	JGI		ISS
PTHR12922	Panther	UBIQUINONE BIOSYNTHESIS PROTEIN	JGI		ISS
PF05019	PFAM	Coenzyme Q (ubiquinone) biosynthesis protein Coq4	JGI		ISS
UniRef100_B9S3F1	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Ubiquinone biosynthesis protein, putative n=1 Tax=Ricinus communis RepID=B9S3F1_RICCO	SoyBase	E_val: 9.00E-143	ISS
UniRef100_I1MKS7	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MKS7_SOYBN	SoyBase	E_val: 9.00E-165	ISS

Expression Patterns of Glyma16g03660

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma16g03660 not represented in the dataset	Glyma16g03660 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma16g03660

Paralog	Evidence	Comments
Glyma07g07260	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma16g03660 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.16g032800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma16g03660

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma16g03660

Limit To All Plant Sequences

>Glyma16g03660.2   sequence type=transcript   gene model=Glyma16g03660   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TGAAGATTTCGATATGATTGGAGATCTTGACATTGTTTACAAATTAGTATTATGATATTATCAGCCTTATCTCTTCAATTTTTTTAGCTACATTTTCTTTGGCGATTAATGATCAAGCGACTCACATATAGTCTTCGACCAAGATGAGGCTATTGTTTCCTCCACCTGCCAAGTTGCTTCCAACACCTCCTATATGACTTCTGGAATGGACAATCTGGAGAGTAAAATTACATTACCAAATGTACCCTTTTTTTAACATTCCAAAATGACCAATTCAAAATGTAAAAAAAAAAAAATCTAAAATGGGTGCAGGAAGCAAGTTGGGGTGCAGGAAGTAACAGCCCCAAGATGATCGAGATTGCGGTCTATCTAGGTTTCATAACTATGAGAATTTTACTTCCTACACCTTCTTTGCTTCCTGTACCCAAAGAATATTTAAAGAACAATTTACTCTTGGATGATATGCTACGCGATTTGATCTCTTTCTCCGAGGAATCACCGTCGTCGTTGGTGAGCGAGGGGGATGAAGATTTATTAGAACCATATGAAACTGAGATCTCTCTAAAATGCTTGCTTTTGCTTCTTCTCTCTAAAACTGCATCCTTGGAATCAGATTAGCAAAGGTAGGTAGTTAGTTATTTGCAATGATAGAAGGTGGTAGAATCCGGCTGAAGACATGGCAGCAGGCAGCTGTGGCAGTGGGTTCGGCGGTGGGGGCGTTGTTGGACCCTCGAAGAGCGGATTTGATAGCAGCTCTTGGTGAGACAACTGGAAAGCCTGCTTTTGAGAGAGTTCTTCAGAGGATGAAGAGTTCCCCTGAAGGGAGGGCTGTACTGTTGGAGCGCCCTCGTGTTGTTTCTGCAAAAGTAGGACATGCTTGGGACCTGCCAGCAAACACCTTTGGTGCTGCCTATGCAAGGTTTATGGGATCTAGGAACTTTTCACCAGATGATCGACCTCCTGTGCGGTTCATGGACACAGATGAACTAGCCTATGTAGCCATGCGGGCTCGTGAAGTGCATGACTTCTGGCACACCCTTTTTGACCTTCCTACTAACTTGATTGGGGAGACAGCACTGAAGGTTATTGAGTTTGAGCAGATGGGCCTTCCTATGTGTCTGCTGTCCGTTATAGGGGGCACGGCTAGATTCAGTGAAAAGCAGAGAAAATTGTTTTATCATCACTACTTCCCCTGGGCCATTCATGCTGGCATGCAATCCACTGATCTTATGTGTGTATATTATGAGCGGCATTTTGATGAAGACTTGGAAGATGTTCGCCGAAAACTGCAAATTGTTCCTGCTCCCACTGTTCATTAGCCGTATGTATTCAGACCAGATAAATTGTACTCCTATTTAGTTTTCTGGATAATAGCAGTGTGCTAGAGTTTTGCAATCAAAATCATGGAATAAAATCCAGTGTACAAGCTTTGCCTCTAATATTTAGTCAATGAGCATTGTATAGGTTGGATTTGATCATATGATCAGCAAAATAAACTTATCATCACATTCTATTTTTTTCAACATATCCTGTTATAGTGCTTCTTGTAGTCACTGGATTT

>Glyma16g03660.4   sequence type=transcript   gene model=Glyma16g03660   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TCATTCTCGAAAGTCGAAACTTTCCCCTCATTTTCATTCTTCTTTCAATTAGCAAAGGTAGGTAGTTAGTTATTTGCAATGATAGAAGGTGGTAGAATCCGGCTGAAGACATGGCAGCAGGCAGCTGTGGCAGTGGGTTCGGCGGTGGGGGCGTTGTTGGACCCTCGAAGAGCGGATTTGATAGCAGCTCTTGGTGAGACAACTGGAAAGCCTGCTTTTGAGAGAGTTCTTCAGAGGATGAAGAGTTCCCCTGAAGGGAGGGCTGTACTGTTGGAGCGCCCTCGTGTTGTTTCTGCAAAAGTAGGACATGCTTGGGACCTGCCAGCAAACACCTTTGGTGCTGCCTATGCAAGGTTTATGGGATCTAGGAACTTTTCACCAGATGATCGACCTCCTGTGCGGTTCATGGACACAGATGAACTAGCCTATGTAGCCATGCGGGCTCGTGAAGTGCATGACTTCTGGCACACCCTTTTTGACCTTCCTACTAACTTGATTGGGGAGACAGCACTGAAGGTTATTGAGTTTGAGCAGATGGGCCTTCCTATGTGTCTGCTGTCCGTTATAGGGGGCACGGCTAGATTCAGTGAAAAGCAGAGAAAATTGTTTTATCATCACTACTTCCCCTGGGCCATTCATGCTGGCATGCAATCCACTGATCTTATGTGTGTATATTATGAGCGGCATTTTGATGAAGACTTGGAAGATGTTCGCCGAAAACTGCAAATTGTTCCTGCTCCCACTGTTCATTAGCCGTATGTATTCAGACCAGATAAATTGTACTCCTATTTAGTTTTCTGGATAATAGCAGTGTGCTAGAGTTTTGCAATCAAAATCATGGAATAAAATCCAGTGTACAAGCTTTGCCTCTAATATTTAGTCAATGAGCATTGTATAGGTTGGATTTGATCATATGATCAGCAAAATAAACTTATCATCACATTCTATTTTTTTCAACATATCCTGTTA

>Glyma16g03660.5   sequence type=transcript   gene model=Glyma16g03660   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TGAAGATTTCGATATGATTGGAGATCTTGACATTGTTTACAAATTAGTATTATGATATTATCAGCCTTATCTCTTCAATTTTTTTAGCTACATTTTCTTTGGCGATTAATGATCAAGCGACTCACATATAGTCTTCGACCAAGATGAGGCTATTGTTTCCTCCACCTGCCAAGTTGCTTCCAACACCTCCTATATGACTTCTGGAATGGACAATCTGGAGAGTAAAATTACATTACCAAATGTACCCTTTTTTTAACATTCCAAAATGACCAATTCAAAATGTAAAAAAAAAAAAATCTAAAATGGGTGCAGGAAGCAAGTTGGGGTGCAGGAAGTAACAGCCCCAAGATGATCGAGATTGCGGTCTATCTAGGTTTCATAACTATGAGAATTTTACTTCCTACACCTTCTTTGCTTCCTGTACCCAAAGAATATTTAAAGAACAATTTACTCTTGGATGATATGCTACGCGATTTGATCTCTTTCTCCGAGGAATCACCGTCGTCGTTGGTGAGCGAGGGGGATGAAGATTTATTAGAACCATATGAAACTGAGATCTCTCTAAAATGCTTGCTTTTGCTTCTTCTCTCTAAAACTGCATCCTTGGAATCAGGCGAGACAGAGTTTTCTTCATTCTCGAAAATTAGCAAAGGTAGGTAGTTAGTTATTTGCAATGATAGAAGGTGGTAGAATCCGGCTGAAGACATGGCAGCAGGCAGCTGTGGCAGTGGGTTCGGCGGTGGGGGCGTTGTTGGACCCTCGAAGAGCGGATTTGATAGCAGCTCTTGGTGAGACAACTGGAAAGCCTGCTTTTGAGAGAGTTCTTCAGAGGATGAAGAGTTCCCCTGAAGGGAGGGCTGTACTGTTGGAGCGCCCTCGTGTTGTTTCTGCAAAAGTAGGACATGCTTGGGACCTGCCAGCAAACACCTTTGGTGCTGCCTATGCAAGGTTTATGGGATCTAGGAACTTTTCACCAGATGATCGACCTCCTGTGCGGTTCATGGACACAGATGAACTAGCCTATGTAGCCATGCGGGCTCGTGAAGTGCATGACTTCTGGCACACCCTTTTTGACCTTCCTACTAACTTGATTGGGGAGACAGCACTGAAGGTTATTGAGTTTGAGCAGATGGGCCTTCCTATGTGTCTGCTGTCCGTTATAGGGGGCACGGCTAGATTCAGTGAAAAGCAGAGAAAATTGTTTTATCATCACTACTTCCCCTGGGCCATTCATGCTGGCATGCAATCCACTGATCTTATGTGTGTATATTATGAGCGGCATTTTGATGAAGACTTGGAAGATGTTCGCCGAAAACTGCAAATTGTTCCTGCTCCCACTGTTCATTAGCCGTATGTATTCAGACCAGATAAATTGTACTCCTATTTAGTTTTCTGGATAATAGCAGTGTGCTAGAGTTTTGCAATCAAAATCATGGAATAAAATCCAGTGTACAAGCTTTGCCTCTAATATTTAGTCAATGAGCATTGTATAGGTTGGATTTGATCATATGATCAGCAAAATAAACTTATCATCACATTCTATTTTTTTCAACATATCCTGTTATAGTGCTTCTTGTAGTCACTGGATTT

Coding sequences of Glyma16g03660

Limit To All Plant Sequences

>Glyma16g03660.1   sequence type=CDS   gene model=Glyma16g03660   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATAGAAGGTGGTAGAATCCGGCTGAAGACATGGCAGCAGGCAGCTGTGGCAGTGGGTTCGGCGGTGGGGGCGTTGTTGGACCCTCGAAGAGCGGATTTGATAGCAGCTCTTGGTGAGACAACTGGAAAGCCTGCTTTTGAGAGAGTTCTTCAGAGGATGAAGAGTTCCCCTGAAGGGAGGGCTGTACTGTTGGAGCGCCCTCGTGTTGTTTCTGCAAAAGTAGGACATGCTTGGGACCTGCCAGCAAACACCTTTGGTGCTGCCTATGCAAGGTTTATGGGATCTAGGAACTTTTCACCAGATGATCGACCTCCTGTGCGGTTCATGGACACAGATGAACTAGCCTATGTAGCCATGCGGGCTCGTGAAGTGCATGACTTCTGGCACACCCTTTTTGACCTTCCTACTAACTTGATTGGGGAGACAGCACTGAAGGTTATTGAGTTTGAGCAGATGGGCCTTCCTATGTGTCTGCTGTCCGTTATAGGGGGCACGGCTAGATTCAGTGAAAAGCAGAGAAAATTGTTTTATCATCACTACTTCCCCTGGGCCATTCATGCTGGCATGCAATCCACTGATCTTATGTGTGTATATTATGAGCGGCATTTTGATGAAGACTTGGAAGATGTTCGCCGAAAACTGCAAATTGTTCCTGCTCCCACTGTTCATTAG

>Glyma16g03660.2   sequence type=CDS   gene model=Glyma16g03660   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATAGAAGGTGGTAGAATCCGGCTGAAGACATGGCAGCAGGCAGCTGTGGCAGTGGGTTCGGCGGTGGGGGCGTTGTTGGACCCTCGAAGAGCGGATTTGATAGCAGCTCTTGGTGAGACAACTGGAAAGCCTGCTTTTGAGAGAGTTCTTCAGAGGATGAAGAGTTCCCCTGAAGGGAGGGCTGTACTGTTGGAGCGCCCTCGTGTTGTTTCTGCAAAAGTAGGACATGCTTGGGACCTGCCAGCAAACACCTTTGGTGCTGCCTATGCAAGGTTTATGGGATCTAGGAACTTTTCACCAGATGATCGACCTCCTGTGCGGTTCATGGACACAGATGAACTAGCCTATGTAGCCATGCGGGCTCGTGAAGTGCATGACTTCTGGCACACCCTTTTTGACCTTCCTACTAACTTGATTGGGGAGACAGCACTGAAGGTTATTGAGTTTGAGCAGATGGGCCTTCCTATGTGTCTGCTGTCCGTTATAGGGGGCACGGCTAGATTCAGTGAAAAGCAGAGAAAATTGTTTTATCATCACTACTTCCCCTGGGCCATTCATGCTGGCATGCAATCCACTGATCTTATGTGTGTATATTATGAGCGGCATTTTGATGAAGACTTGGAAGATGTTCGCCGAAAACTGCAAATTGTTCCTGCTCCCACTGTTCATTAG

>Glyma16g03660.4   sequence type=CDS   gene model=Glyma16g03660   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATAGAAGGTGGTAGAATCCGGCTGAAGACATGGCAGCAGGCAGCTGTGGCAGTGGGTTCGGCGGTGGGGGCGTTGTTGGACCCTCGAAGAGCGGATTTGATAGCAGCTCTTGGTGAGACAACTGGAAAGCCTGCTTTTGAGAGAGTTCTTCAGAGGATGAAGAGTTCCCCTGAAGGGAGGGCTGTACTGTTGGAGCGCCCTCGTGTTGTTTCTGCAAAAGTAGGACATGCTTGGGACCTGCCAGCAAACACCTTTGGTGCTGCCTATGCAAGGTTTATGGGATCTAGGAACTTTTCACCAGATGATCGACCTCCTGTGCGGTTCATGGACACAGATGAACTAGCCTATGTAGCCATGCGGGCTCGTGAAGTGCATGACTTCTGGCACACCCTTTTTGACCTTCCTACTAACTTGATTGGGGAGACAGCACTGAAGGTTATTGAGTTTGAGCAGATGGGCCTTCCTATGTGTCTGCTGTCCGTTATAGGGGGCACGGCTAGATTCAGTGAAAAGCAGAGAAAATTGTTTTATCATCACTACTTCCCCTGGGCCATTCATGCTGGCATGCAATCCACTGATCTTATGTGTGTATATTATGAGCGGCATTTTGATGAAGACTTGGAAGATGTTCGCCGAAAACTGCAAATTGTTCCTGCTCCCACTGTTCATTAG

>Glyma16g03660.5   sequence type=CDS   gene model=Glyma16g03660   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATAGAAGGTGGTAGAATCCGGCTGAAGACATGGCAGCAGGCAGCTGTGGCAGTGGGTTCGGCGGTGGGGGCGTTGTTGGACCCTCGAAGAGCGGATTTGATAGCAGCTCTTGGTGAGACAACTGGAAAGCCTGCTTTTGAGAGAGTTCTTCAGAGGATGAAGAGTTCCCCTGAAGGGAGGGCTGTACTGTTGGAGCGCCCTCGTGTTGTTTCTGCAAAAGTAGGACATGCTTGGGACCTGCCAGCAAACACCTTTGGTGCTGCCTATGCAAGGTTTATGGGATCTAGGAACTTTTCACCAGATGATCGACCTCCTGTGCGGTTCATGGACACAGATGAACTAGCCTATGTAGCCATGCGGGCTCGTGAAGTGCATGACTTCTGGCACACCCTTTTTGACCTTCCTACTAACTTGATTGGGGAGACAGCACTGAAGGTTATTGAGTTTGAGCAGATGGGCCTTCCTATGTGTCTGCTGTCCGTTATAGGGGGCACGGCTAGATTCAGTGAAAAGCAGAGAAAATTGTTTTATCATCACTACTTCCCCTGGGCCATTCATGCTGGCATGCAATCCACTGATCTTATGTGTGTATATTATGAGCGGCATTTTGATGAAGACTTGGAAGATGTTCGCCGAAAACTGCAAATTGTTCCTGCTCCCACTGTTCATTAG

Predicted protein sequences of Glyma16g03660

Limit To All Plant Sequences

>Glyma16g03660.1   sequence type=predicted peptide   gene model=Glyma16g03660   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MIEGGRIRLKTWQQAAVAVGSAVGALLDPRRADLIAALGETTGKPAFERVLQRMKSSPEGRAVLLERPRVVSAKVGHAWDLPANTFGAAYARFMGSRNFSPDDRPPVRFMDTDELAYVAMRAREVHDFWHTLFDLPTNLIGETALKVIEFEQMGLPMCLLSVIGGTARFSEKQRKLFYHHYFPWAIHAGMQSTDLMCVYYERHFDEDLEDVRRKLQIVPAPTVH*

>Glyma16g03660.2   sequence type=predicted peptide   gene model=Glyma16g03660   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MIEGGRIRLKTWQQAAVAVGSAVGALLDPRRADLIAALGETTGKPAFERVLQRMKSSPEGRAVLLERPRVVSAKVGHAWDLPANTFGAAYARFMGSRNFSPDDRPPVRFMDTDELAYVAMRAREVHDFWHTLFDLPTNLIGETALKVIEFEQMGLPMCLLSVIGGTARFSEKQRKLFYHHYFPWAIHAGMQSTDLMCVYYERHFDEDLEDVRRKLQIVPAPTVH*

>Glyma16g03660.4   sequence type=predicted peptide   gene model=Glyma16g03660   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MIEGGRIRLKTWQQAAVAVGSAVGALLDPRRADLIAALGETTGKPAFERVLQRMKSSPEGRAVLLERPRVVSAKVGHAWDLPANTFGAAYARFMGSRNFSPDDRPPVRFMDTDELAYVAMRAREVHDFWHTLFDLPTNLIGETALKVIEFEQMGLPMCLLSVIGGTARFSEKQRKLFYHHYFPWAIHAGMQSTDLMCVYYERHFDEDLEDVRRKLQIVPAPTVH*

>Glyma16g03660.5   sequence type=predicted peptide   gene model=Glyma16g03660   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MIEGGRIRLKTWQQAAVAVGSAVGALLDPRRADLIAALGETTGKPAFERVLQRMKSSPEGRAVLLERPRVVSAKVGHAWDLPANTFGAAYARFMGSRNFSPDDRPPVRFMDTDELAYVAMRAREVHDFWHTLFDLPTNLIGETALKVIEFEQMGLPMCLLSVIGGTARFSEKQRKLFYHHYFPWAIHAGMQSTDLMCVYYERHFDEDLEDVRRKLQIVPAPTVH*

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