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Report for Sequence Feature Glyma16g03480

Feature Type:gene_model
Chromosome:Gm16
Start:2926618
stop:2929426
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma16g03480
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G64000AT Annotation by Michelle Graham. TAIR10: WRKY DNA-binding protein 56 | chr1:23747434-23748883 FORWARD LENGTH=195 SoyBaseE_val: 2.00E-57ISS
GO:0006355GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0003700GO-mf Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity SoyBaseN/AISS
GO:0043565GO-mf Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding SoyBaseN/AISS
PF03106PFAM WRKY DNA -binding domain JGI ISS
UniRef100_C9DI08UniRef Annotation by Michelle Graham. Most informative UniRef hit: WRKY transcription factor 19 n=1 Tax=(Populus tomentosa x P. bolleana) x P. tomentosa RepID=C9DI08_9ROSI SoyBaseE_val: 1.00E-74ISS
UniRef100_UPI000233BBE9UniRef Annotation by Michelle Graham. Best UniRef hit: UPI000233BBE9 related cluster n=1 Tax=unknown RepID=UPI000233BBE9 SoyBaseE_val: 9.00E-145ISS

Proteins Associated with Glyma16g03480
LocusGene SymbolProtein Name
WRKY153 WRKY Transcription Factor

Expression Patterns of Glyma16g03480
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma16g03480 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.16g031400 Wm82.a2.v1IGC As supplied by JGI

References for Glyma16g03480
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Transcripts of Glyma16g03480
>Glyma16g03480.2   sequence type=transcript   gene model=Glyma16g03480   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CTCCATTCCATTCCCACCCTATCATTCAATGGAAAGCCAAGATCCACAAAACTCTCCTCCCTTCCTTTTCACTCCCATGTCAATGATGCAAAACCCAAATTTGGAACCTCAAGGCTTGCATGATGACATAGACTGGGTTAGCCTTTTCTCTGGCCAGAGCAACTTCCTTGCGGATGCCAATGCGATGATGGAATGCGCTTCTTCTTCTTCTTCTTCTTCGTCCTCCTCGTGTGCTTTGATGGCTGAAAAGAGTGATAAAGAGACAATGAAAGGGGGTAGATTGAGGAAGACAACACGACCCAGGTTTGCGTTTCAGACGAGAAGTGAAGATGATATTTTGGATGATGGTTATCGTTGGAGGAAGTATGGACAGAAAGCTGTGAAGAACAACATGCATCCCAGAAGCTACTACCGTTGCACGCATCATACATGCAATGTGAAGAAACAGGTGCAAAGGTTATCCAAAGACACAAGCATCGTGGTGACCACTTACGAGGGAATTCACAATCACCCATGCGAAAAGCTCATGGAAACCCTAACGCCCCTTCTGAGGCAAATGCAGTTTCTCTCTAGGTTAGCTTCCAATAATAACGGCGGTCCTTCTTCTCTGCTATAGCTACAGCCTGCAATATATATGCAATTGATATATATAAGTCCATGTCACAAAGTTGACTTATATTTACGCTCTTCATTTGCTTTCTAATTAATTAATGTTGTAATTGATCAGATGTACAATGCACTTTCACATCTGGTTTGTATATGTCACATCCCAGTGCAAAGGTTATCCTTTTCAACATTTTGCATTCTTCATATAATATACTTAAAGATCTGAAT
Coding sequences of Glyma16g03480
>Glyma16g03480.1   sequence type=CDS   gene model=Glyma16g03480   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAAAGCCAAGATCCACAAAACTCTCCTCCCTTCCTTTTCACTCCCATGTCAATGATGCAAAACCCAAATTTGGAACCTCAAGGCTTGCATGATGACATAGACTGGGTTAGCCTTTTCTCTGGCCAGAGCAACTTCCTTGCGGATGCCAATGCGATGATGGAATGCGCTTCTTCTTCTTCTTCTTCTTCGTCCTCCTCGTGTGCTTTGATGGCTGAAAAGAGTGATAAAGAGACAATGAAAGGGGGTAGATTGAGGAAGACAACACGACCCAGGTTTGCGTTTCAGACGAGAAGTGAAGATGATATTTTGGATGATGGTTATCGTTGGAGGAAGTATGGACAGAAAGCTGTGAAGAACAACATGCATCCCAGCTACTACCGTTGCACGCATCATACATGCAATGTGAAGAAACAGGTGCAAAGGTTATCCAAAGACACAAGCATCGTGGTGACCACTTACGAGGGAATTCACAATCACCCATGCGAAAAGCTCATGGAAACCCTAACGCCCCTTCTGAGGCAAATGCAGTTTCTCTCTAGGTTAGCTTCCAATAATAACGGCGGTCCTTCTTCTCTGCTATAG

>Glyma16g03480.2   sequence type=CDS   gene model=Glyma16g03480   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAAAGCCAAGATCCACAAAACTCTCCTCCCTTCCTTTTCACTCCCATGTCAATGATGCAAAACCCAAATTTGGAACCTCAAGGCTTGCATGATGACATAGACTGGGTTAGCCTTTTCTCTGGCCAGAGCAACTTCCTTGCGGATGCCAATGCGATGATGGAATGCGCTTCTTCTTCTTCTTCTTCTTCGTCCTCCTCGTGTGCTTTGATGGCTGAAAAGAGTGATAAAGAGACAATGAAAGGGGGTAGATTGAGGAAGACAACACGACCCAGGTTTGCGTTTCAGACGAGAAGTGAAGATGATATTTTGGATGATGGTTATCGTTGGAGGAAGTATGGACAGAAAGCTGTGAAGAACAACATGCATCCCAGAAGCTACTACCGTTGCACGCATCATACATGCAATGTGAAGAAACAGGTGCAAAGGTTATCCAAAGACACAAGCATCGTGGTGACCACTTACGAGGGAATTCACAATCACCCATGCGAAAAGCTCATGGAAACCCTAACGCCCCTTCTGAGGCAAATGCAGTTTCTCTCTAGGTTAGCTTCCAATAATAACGGCGGTCCTTCTTCTCTGCTATAG
Predicted protein sequences of Glyma16g03480
>Glyma16g03480.1   sequence type=predicted peptide   gene model=Glyma16g03480   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MESQDPQNSPPFLFTPMSMMQNPNLEPQGLHDDIDWVSLFSGQSNFLADANAMMECASSSSSSSSSSCALMAEKSDKETMKGGRLRKTTRPRFAFQTRSEDDILDDGYRWRKYGQKAVKNNMHPSYYRCTHHTCNVKKQVQRLSKDTSIVVTTYEGIHNHPCEKLMETLTPLLRQMQFLSRLASNNNGGPSSLL*

>Glyma16g03480.2   sequence type=predicted peptide   gene model=Glyma16g03480   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MESQDPQNSPPFLFTPMSMMQNPNLEPQGLHDDIDWVSLFSGQSNFLADANAMMECASSSSSSSSSSCALMAEKSDKETMKGGRLRKTTRPRFAFQTRSEDDILDDGYRWRKYGQKAVKNNMHPRSYYRCTHHTCNVKKQVQRLSKDTSIVVTTYEGIHNHPCEKLMETLTPLLRQMQFLSRLASNNNGGPSSLL*






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