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Report for Sequence Feature Glyma16g03470

Feature Type:gene_model
Chromosome:Gm16
Start:2924106
stop:2925414
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma16g03470
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G01470AT Annotation by Michelle Graham. TAIR10: Late embryogenesis abundant protein | chr1:172295-172826 REVERSE LENGTH=151 SoyBaseE_val: 7.00E-73ISS
GO:0009269GO-bp Annotation by Michelle Graham. GO Biological Process: response to desiccation SoyBaseN/AISS
GO:0009409GO-bp Annotation by Michelle Graham. GO Biological Process: response to cold SoyBaseN/AISS
GO:0009414GO-bp Annotation by Michelle Graham. GO Biological Process: response to water deprivation SoyBaseN/AISS
GO:0009611GO-bp Annotation by Michelle Graham. GO Biological Process: response to wounding SoyBaseN/AISS
GO:0009644GO-bp Annotation by Michelle Graham. GO Biological Process: response to high light intensity SoyBaseN/AISS
GO:0009737GO-bp Annotation by Michelle Graham. GO Biological Process: response to abscisic acid stimulus SoyBaseN/AISS
GO:0009793GO-bp Annotation by Michelle Graham. GO Biological Process: embryo development ending in seed dormancy SoyBaseN/AISS
GO:0010286GO-bp Annotation by Michelle Graham. GO Biological Process: heat acclimation SoyBaseN/AISS
GO:0050832GO-bp Annotation by Michelle Graham. GO Biological Process: defense response to fungus SoyBaseN/AISS
GO:0005829GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytosol SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
PF03168PFAM Late embryogenesis abundant protein JGI ISS
UniRef100_Q9XER5UniRef Annotation by Michelle Graham. Most informative UniRef hit: Seed maturation protein PM22 n=1 Tax=Glycine max RepID=Q9XER5_SOYBN SoyBaseE_val: 8.00E-104ISS
UniRef100_Q9XER5UniRef Annotation by Michelle Graham. Best UniRef hit: Seed maturation protein PM22 n=1 Tax=Glycine max RepID=Q9XER5_SOYBN SoyBaseE_val: 8.00E-104ISS

Expression Patterns of Glyma16g03470
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma16g03470 not represented in the dataset
Glyma16g03470 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma16g03470 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.16g031300 Wm82.a2.v1IGC As supplied by JGI

References for Glyma16g03470
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma16g03470
>Glyma16g03470.1   sequence type=CDS   gene model=Glyma16g03470   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCGCAGTTGCTGGATAAAGCCAAGAACTTCGTGTCGGAGAAGGTAAATGATATGGCCAAGCCGGAGGCGAGTGTCACTGACGTGGACTTCAAGCGCGTGAGCAAAGATAATGTCGAGTACTTGGCCAAGGTCTCTGTTCGTAACCCTTATTCAACTTCCATACCCATTTGTGAGATCAACTACTCTTTCAAAAGCGCATCCAGGGAGATAGCATCAGGGAAAATTCCAGACCCAGGATCGTTGAAGGCAAAGGACACAACAATGGTGGATGTGCCAGTTAAGGTTCCATACAGCATATTGATGAGCTTGGCAAAGGACATTGGTGCTGACTGGGACATAGACTATCAATTGGATCTTGGTCTGGTTATTGATGTTCCTGTCATTGGCATCTTCACCATTCCTCTCTCTCAGAAAGGAGAGATCAAGCTACCAACCCTCTCTACCATGTTCGCCTAA
Predicted protein sequences of Glyma16g03470
>Glyma16g03470.1   sequence type=predicted peptide   gene model=Glyma16g03470   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSQLLDKAKNFVSEKVNDMAKPEASVTDVDFKRVSKDNVEYLAKVSVRNPYSTSIPICEINYSFKSASREIASGKIPDPGSLKAKDTTMVDVPVKVPYSILMSLAKDIGADWDIDYQLDLGLVIDVPVIGIFTIPLSQKGEIKLPTLSTMFA*






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